JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CDX2_chr13_27955918_27974315	0/0	t0009	2506	4	0	0	4	0	0	copy fasta	CDX2	chr13	27955918	27974315
CDX2_chr13_27955918_27974315	0/0	t0010	2506	4	2	2	0	0	0	copy fasta	CDX2	chr13	27955918	27974315
CDX2_chr13_27955918_27974315	0/0	t0011	2506	4	3	1	0	0	0	copy fasta	CDX2	chr13	27955918	27974315
CDX2_chr13_27955918_27974315	0/0	t0012	2506	3	0	0	3	0	0	copy fasta	CDX2	chr13	27955918	27974315
CDX2_chr13_27955918_27974315	0/0	t0013	2506	3	3	0	0	0	0	copy fasta	CDX2	chr13	27955918	27974315
CDX2_chr13_27955918_27974315	0/0	t0014	2507	2	0	0	2	0	0	copy fasta	CDX2	chr13	27955918	27974315
CDX2_chr13_27955918_27974315	0/0	t0015	2507	2	2	0	0	0	0	copy fasta	CDX2	chr13	27955918	27974315
CDX2_chr13_27955918_27974315	0/0	t0016	2506	1	0	1	0	0	0	copy fasta	CDX2	chr13	27955918	27974315
CDX2_chr13_27955918_27974315	0/0	t0017	2506	1	1	0	0	0	0	copy fasta	CDX2	chr13	27955918	27974315
CDX2_chr13_27955918_27974315	0/0	t0018	2507	1	0	0	1	0	0	copy fasta	CDX2	chr13	27955918	27974315
CDX2_chr13_27955918_27974315	0/0	t0019	2506	1	0	0	1	0	0	copy fasta	CDX2	chr13	27955918	27974315
CDX2_chr13_27955918_27974315	0/0	t0020	2506	1	0	0	1	0	0	copy fasta	CDX2	chr13	27955918	27974315
CDX2_chr13_27955918_27974315	0/0	t0021	2506	1	1	0	0	0	0	copy fasta	CDX2	chr13	27955918	27974315
CDX2_chr13_27955918_27974315	0/0	t0022	2506	1	0	0	1	0	0	copy fasta	CDX2	chr13	27955918	27974315
CDX2_chr13_27955918_27974315	0/0	t0023	2507	1	1	0	0	0	0	copy fasta	CDX2	chr13	27955918	27974315
CDX2_chr13_27955918_27974315	0/0	t0024	2506	1	1	0	0	0	0	copy fasta	CDX2	chr13	27955918	27974315
CDX2_chr13_27955918_27974315	0/0	t0025	2507	1	0	0	1	0	0	copy fasta	CDX2	chr13	27955918	27974315
CDX2_chr13_27955918_27974315	0/0	t0026	2507	1	0	0	1	0	0	copy fasta	CDX2	chr13	27955918	27974315
CDX2_chr13_27955918_27974315	0/0	t0027	2506	1	0	1	0	0	0	copy fasta	CDX2	chr13	27955918	27974315
CDX4_chrX_73442053_73460171	1/1	t0001	788	278	80	47	110	9	30	copy fasta	CDX4	chrX	73442053	73460171
CDX4_chrX_73442053_73460171	0/0	t0002	788	6	2	2	0	2	0	copy fasta	CDX4	chrX	73442053	73460171
CDX4_chrX_73442053_73460171	0/0	t0003	788	3	0	0	3	0	0	copy fasta	CDX4	chrX	73442053	73460171
CDX4_chrX_73442053_73460171	0/0	t0004	800	1	0	0	1	0	0	copy fasta	CDX4	chrX	73442053	73460171
CDX4_chrX_73442053_73460171	0/0	t0005	788	1	0	0	1	0	0	copy fasta	CDX4	chrX	73442053	73460171
CDY1B_chrY_24040793_24053019	0/0	t0001	605	47	0	15	22	3	7	copy fasta	CDY1B	chrY	24040793	24053019
CDY1B_chrY_24040793_24053019	0/0	t0002	605	3	0	0	2	0	1	copy fasta	CDY1B	chrY	24040793	24053019
CDY1B_chrY_24040793_24053019	0/0	t0003	611	1	0	0	1	0	0	copy fasta	CDY1B	chrY	24040793	24053019
CDY1_chrY_25617117_25629902	0/0	t0001	702	67	10	10	35	2	10	copy fasta	CDY1	chrY	25617117	25629902
CDY1_chrY_25617117_25629902	0/0	t0002	702	19	0	6	10	3	0	copy fasta	CDY1	chrY	25617117	25629902
CDY1_chrY_25617117_25629902	0/0	t0003	702	1	0	1	0	0	0	copy fasta	CDY1	chrY	25617117	25629902
CDY1_chrY_25617117_25629902	0/0	t0004	702	1	0	0	0	0	1	copy fasta	CDY1	chrY	25617117	25629902
CDY1_chrY_25617117_25629902	0/0	t0005	702	1	1	0	0	0	0	copy fasta	CDY1	chrY	25617117	25629902
CDY1_chrY_25617117_25629902	0/0	t0006	703	1	0	0	1	0	0	copy fasta	CDY1	chrY	25617117	25629902
CDY1_chrY_25617117_25629902	0/0	t0007	701	1	0	0	1	0	0	copy fasta	CDY1	chrY	25617117	25629902
CDY1_chrY_25617117_25629902	0/0	t0008	701	1	0	0	1	0	0	copy fasta	CDY1	chrY	25617117	25629902
CDY2A_chrY_18020787_18032746	0/0	t0001	335	66	9	17	22	3	15	copy fasta	CDY2A	chrY	18020787	18032746
CDY2A_chrY_18020787_18032746	0/0	t0002	335	1	0	0	0	1	0	copy fasta	CDY2A	chrY	18020787	18032746
CDY2B_chrY_17873260_17885220	0/0	t0001	336	37	5	11	12	1	8	copy fasta	CDY2B	chrY	17873260	17885220
CDY2B_chrY_17873260_17885220	0/0	t0002	336	16	0	7	0	2	7	copy fasta	CDY2B	chrY	17873260	17885220
CDYL2_chr16_80592907_80809598	1/1	t0001	6907	62	3	10	36	3	8	copy fasta	CDYL2	chr16	80592907	80809598
CDYL2_chr16_80592907_80809598	0/0	t0002	6903	27	8	3	13	0	3	copy fasta	CDYL2	chr16	80592907	80809598
CDYL2_chr16_80592907_80809598	0/0	t0003	6909	20	2	7	8	0	3	copy fasta	CDYL2	chr16	80592907	80809598
CDYL2_chr16_80592907_80809598	0/0	t0004	6905	14	6	6	0	2	0	copy fasta	CDYL2	chr16	80592907	80809598
CDYL2_chr16_80592907_80809598	0/0	t0005	6909	12	9	3	0	0	0	copy fasta	CDYL2	chr16	80592907	80809598
CDYL2_chr16_80592907_80809598	0/0	t0006	6903	10	0	2	8	0	0	copy fasta	CDYL2	chr16	80592907	80809598
CDYL2_chr16_80592907_80809598	0/0	t0007	6905	7	6	1	0	0	0	copy fasta	CDYL2	chr16	80592907	80809598
CDYL2_chr16_80592907_80809598	0/0	t0008	6905	6	3	0	3	0	0	copy fasta	CDYL2	chr16	80592907	80809598
CDYL2_chr16_80592907_80809598	0/0	t0009	6905	6	3	0	3	0	0	copy fasta	CDYL2	chr16	80592907	80809598
CDYL2_chr16_80592907_80809598	0/0	t0010	6905	6	0	5	1	0	0	copy fasta	CDYL2	chr16	80592907	80809598
CDYL2_chr16_80592907_80809598	0/0	t0011	6905	5	4	1	0	0	0	copy fasta	CDYL2	chr16	80592907	80809598