JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CELSR2_chr1_109244539_109280751	0/0	t0010	2245	5	5	0	0	0	0	copy fasta	CELSR2	chr1	109244539	109280751
CELSR2_chr1_109244539_109280751	0/0	t0011	2245	4	4	0	0	0	0	copy fasta	CELSR2	chr1	109244539	109280751
CELSR2_chr1_109244539_109280751	0/0	t0012	2244	4	4	0	0	0	0	copy fasta	CELSR2	chr1	109244539	109280751
CELSR2_chr1_109244539_109280751	0/0	t0013	2245	2	2	0	0	0	0	copy fasta	CELSR2	chr1	109244539	109280751
CELSR2_chr1_109244539_109280751	0/0	t0014	2245	2	0	0	2	0	0	copy fasta	CELSR2	chr1	109244539	109280751
CELSR2_chr1_109244539_109280751	0/0	t0015	2245	1	1	0	0	0	0	copy fasta	CELSR2	chr1	109244539	109280751
CELSR2_chr1_109244539_109280751	0/0	t0016	2244	1	1	0	0	0	0	copy fasta	CELSR2	chr1	109244539	109280751
CELSR2_chr1_109244539_109280751	0/0	t0017	2262	1	0	0	1	0	0	copy fasta	CELSR2	chr1	109244539	109280751
CELSR2_chr1_109244539_109280751	0/0	t0018	2245	1	0	1	0	0	0	copy fasta	CELSR2	chr1	109244539	109280751
CELSR2_chr1_109244539_109280751	0/0	t0019	2244	1	1	0	0	0	0	copy fasta	CELSR2	chr1	109244539	109280751
CELSR2_chr1_109244539_109280751	0/0	t0020	2245	1	0	0	0	0	1	copy fasta	CELSR2	chr1	109244539	109280751
CELSR2_chr1_109244539_109280751	0/0	t0021	2245	1	0	1	0	0	0	copy fasta	CELSR2	chr1	109244539	109280751
CELSR2_chr1_109244539_109280751	0/0	t0022	2244	1	0	0	0	0	1	copy fasta	CELSR2	chr1	109244539	109280751
CELSR2_chr1_109244539_109280751	0/0	t0023	2244	1	0	1	0	0	0	copy fasta	CELSR2	chr1	109244539	109280751
CELSR2_chr1_109244539_109280751	0/0	t0024	2245	1	0	0	1	0	0	copy fasta	CELSR2	chr1	109244539	109280751
CELSR2_chr1_109244539_109280751	0/0	t0025	2204	1	1	0	0	0	0	copy fasta	CELSR2	chr1	109244539	109280751
CELSR2_chr1_109244539_109280751	0/0	t0026	2244	1	1	0	0	0	0	copy fasta	CELSR2	chr1	109244539	109280751
CELSR2_chr1_109244539_109280751	0/0	t0027	2244	1	1	0	0	0	0	copy fasta	CELSR2	chr1	109244539	109280751
CELSR2_chr1_109244539_109280751	0/0	t0028	2244	1	1	0	0	0	0	copy fasta	CELSR2	chr1	109244539	109280751
CELSR2_chr1_109244539_109280751	0/0	t0029	2245	1	1	0	0	0	0	copy fasta	CELSR2	chr1	109244539	109280751
CELSR2_chr1_109244539_109280751	0/0	t0030	2245	1	1	0	0	0	0	copy fasta	CELSR2	chr1	109244539	109280751
CELSR2_chr1_109244539_109280751	0/0	t0031	2246	1	0	1	0	0	0	copy fasta	CELSR2	chr1	109244539	109280751
CELSR2_chr1_109244539_109280751	0/0	t0032	2245	1	1	0	0	0	0	copy fasta	CELSR2	chr1	109244539	109280751
CELSR2_chr1_109244539_109280751	0/0	t0033	2245	1	0	0	1	0	0	copy fasta	CELSR2	chr1	109244539	109280751
CELSR2_chr1_109244539_109280751	0/0	t0034	2246	1	0	1	0	0	0	copy fasta	CELSR2	chr1	109244539	109280751
CELSR2_chr1_109244539_109280751	0/0	t0035	2240	1	0	0	0	1	0	copy fasta	CELSR2	chr1	109244539	109280751
CELSR2_chr1_109244539_109280751	0/0	t0036	2245	1	0	1	0	0	0	copy fasta	CELSR2	chr1	109244539	109280751
CELSR2_chr1_109244539_109280751	0/0	t0037	2245	1	0	0	1	0	0	copy fasta	CELSR2	chr1	109244539	109280751
CELSR2_chr1_109244539_109280751	0/0	t0038	2245	1	0	0	1	0	0	copy fasta	CELSR2	chr1	109244539	109280751
CELSR2_chr1_109244539_109280751	0/0	t0039	2244	1	1	0	0	0	0	copy fasta	CELSR2	chr1	109244539	109280751
CELSR2_chr1_109244539_109280751	0/0	t0040	2244	1	0	0	1	0	0	copy fasta	CELSR2	chr1	109244539	109280751
CELSR2_chr1_109244539_109280751	0/0	t0041	2245	1	0	0	1	0	0	copy fasta	CELSR2	chr1	109244539	109280751
CELSR2_chr1_109244539_109280751	0/0	t0042	2245	1	0	0	1	0	0	copy fasta	CELSR2	chr1	109244539	109280751
CELSR3_chr3_48631463_48667886	1/1	t0001	1995	141	61	23	43	7	5	copy fasta	CELSR3	chr3	48631463	48667886
CELSR3_chr3_48631463_48667886	0/0	t0002	1995	59	21	8	24	3	3	copy fasta	CELSR3	chr3	48631463	48667886
CELSR3_chr3_48631463_48667886	0/0	t0003	1995	1	1	0	0	0	0	copy fasta	CELSR3	chr3	48631463	48667886
CELSR3_chr3_48631463_48667886	0/0	t0004	1995	1	1	0	0	0	0	copy fasta	CELSR3	chr3	48631463	48667886
CELSR3_chr3_48631463_48667886	0/0	t0005	1995	1	1	0	0	0	0	copy fasta	CELSR3	chr3	48631463	48667886
CELSR3_chr3_48631463_48667886	0/0	t0006	1995	1	0	1	0	0	0	copy fasta	CELSR3	chr3	48631463	48667886
CELSR3_chr3_48631463_48667886	0/0	t0007	1995	1	1	0	0	0	0	copy fasta	CELSR3	chr3	48631463	48667886
CELSR3_chr3_48631463_48667886	0/0	t0008	1995	1	0	0	1	0	0	copy fasta	CELSR3	chr3	48631463	48667886
CEL_chr9_133056981_133076861	1/1	t0001	120	410	89	84	179	16	40	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	t0002	120	5	0	0	5	0	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	t0003	120	1	1	0	0	0	0	copy fasta	CEL	chr9	133056981	133076861
CEMIP2_chr9_71678366_71773513	0/1	t0001	2012	87	6	23	43	1	13	copy fasta	CEMIP2	chr9	71678366	71773513
CEMIP2_chr9_71678366_71773513	0/0	t0002	2016	37	1	4	27	4	1	copy fasta	CEMIP2	chr9	71678366	71773513
CEMIP2_chr9_71678366_71773513	0/0	t0003	2016	21	4	2	11	0	4	copy fasta	CEMIP2	chr9	71678366	71773513
CEMIP2_chr9_71678366_71773513	0/0	t0004	2013	17	3	2	11	0	1	copy fasta	CEMIP2	chr9	71678366	71773513
CEMIP2_chr9_71678366_71773513	0/0	t0005	1999	14	2	8	0	1	3	copy fasta	CEMIP2	chr9	71678366	71773513
CEMIP2_chr9_71678366_71773513	0/0	t0006	2014	11	8	2	1	0	0	copy fasta	CEMIP2	chr9	71678366	71773513