JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CEMIP2_chr9_71678366_71773513	0/0	t0007	2010	10	5	0	4	0	1	copy fasta	CEMIP2	chr9	71678366	71773513
CEMIP2_chr9_71678366_71773513	0/0	t0008	2011	10	9	1	0	0	0	copy fasta	CEMIP2	chr9	71678366	71773513
CEMIP2_chr9_71678366_71773513	0/0	t0009	2011	9	9	0	0	0	0	copy fasta	CEMIP2	chr9	71678366	71773513
CEMIP2_chr9_71678366_71773513	0/0	t0010	2013	9	2	3	2	0	2	copy fasta	CEMIP2	chr9	71678366	71773513
CEMIP2_chr9_71678366_71773513	0/0	t0011	2012	8	0	4	2	0	2	copy fasta	CEMIP2	chr9	71678366	71773513
CEMIP2_chr9_71678366_71773513	0/0	t0012	2018	7	4	0	2	0	1	copy fasta	CEMIP2	chr9	71678366	71773513
CEMIP2_chr9_71678366_71773513	0/0	t0013	2021	6	6	0	0	0	0	copy fasta	CEMIP2	chr9	71678366	71773513
CEMIP2_chr9_71678366_71773513	0/0	t0014	2008	6	0	4	0	1	1	copy fasta	CEMIP2	chr9	71678366	71773513
CEMIP2_chr9_71678366_71773513	0/0	t0015	2015	5	0	0	5	0	0	copy fasta	CEMIP2	chr9	71678366	71773513
CEMIP2_chr9_71678366_71773513	1/0	t0016	2001	4	1	2	0	0	0	copy fasta	CEMIP2	chr9	71678366	71773513
CEMIP2_chr9_71678366_71773513	0/0	t0017	2015	3	1	0	2	0	0	copy fasta	CEMIP2	chr9	71678366	71773513
CEMIP2_chr9_71678366_71773513	0/0	t0018	2019	3	3	0	0	0	0	copy fasta	CEMIP2	chr9	71678366	71773513
CEMIP2_chr9_71678366_71773513	0/0	t0019	1995	3	0	1	0	0	2	copy fasta	CEMIP2	chr9	71678366	71773513
CEMIP2_chr9_71678366_71773513	0/0	t0020	2010	3	3	0	0	0	0	copy fasta	CEMIP2	chr9	71678366	71773513
CEMIP2_chr9_71678366_71773513	0/0	t0021	2018	3	0	1	2	0	0	copy fasta	CEMIP2	chr9	71678366	71773513
CEMIP2_chr9_71678366_71773513	0/0	t0022	2016	2	0	0	1	0	1	copy fasta	CEMIP2	chr9	71678366	71773513
CEMIP2_chr9_71678366_71773513	0/0	t0023	2010	2	0	0	1	1	0	copy fasta	CEMIP2	chr9	71678366	71773513
CEMIP2_chr9_71678366_71773513	0/0	t0024	2009	2	2	0	0	0	0	copy fasta	CEMIP2	chr9	71678366	71773513
CEMIP2_chr9_71678366_71773513	0/0	t0025	2023	2	2	0	0	0	0	copy fasta	CEMIP2	chr9	71678366	71773513
CEMIP2_chr9_71678366_71773513	0/0	t0026	2004	2	2	0	0	0	0	copy fasta	CEMIP2	chr9	71678366	71773513
CEMIP2_chr9_71678366_71773513	0/0	t0027	2015	2	0	1	0	1	0	copy fasta	CEMIP2	chr9	71678366	71773513
CEMIP2_chr9_71678366_71773513	0/0	t0028	2011	2	2	0	0	0	0	copy fasta	CEMIP2	chr9	71678366	71773513
CEMIP2_chr9_71678366_71773513	0/0	t0029	2008	1	0	0	0	0	1	copy fasta	CEMIP2	chr9	71678366	71773513
CEMIP2_chr9_71678366_71773513	0/0	t0030	2013	1	0	0	1	0	0	copy fasta	CEMIP2	chr9	71678366	71773513
CEMIP2_chr9_71678366_71773513	0/0	t0031	2020	1	0	0	0	0	1	copy fasta	CEMIP2	chr9	71678366	71773513
CEMIP2_chr9_71678366_71773513	0/0	t0032	2013	1	0	1	0	0	0	copy fasta	CEMIP2	chr9	71678366	71773513
CEMIP2_chr9_71678366_71773513	0/0	t0033	1999	1	0	1	0	0	0	copy fasta	CEMIP2	chr9	71678366	71773513
CEMIP2_chr9_71678366_71773513	0/0	t0034	2016	1	0	0	1	0	0	copy fasta	CEMIP2	chr9	71678366	71773513
CEMIP2_chr9_71678366_71773513	0/0	t0035	2011	1	0	1	0	0	0	copy fasta	CEMIP2	chr9	71678366	71773513
CEMIP2_chr9_71678366_71773513	0/0	t0036	2014	1	0	1	0	0	0	copy fasta	CEMIP2	chr9	71678366	71773513
CEMIP2_chr9_71678366_71773513	0/0	t0037	2011	1	1	0	0	0	0	copy fasta	CEMIP2	chr9	71678366	71773513
CEMIP2_chr9_71678366_71773513	0/0	t0038	2011	1	1	0	0	0	0	copy fasta	CEMIP2	chr9	71678366	71773513
CEMIP2_chr9_71678366_71773513	0/0	t0039	2011	1	1	0	0	0	0	copy fasta	CEMIP2	chr9	71678366	71773513
CEMIP2_chr9_71678366_71773513	0/0	t0040	2017	1	1	0	0	0	0	copy fasta	CEMIP2	chr9	71678366	71773513
CEMIP2_chr9_71678366_71773513	0/0	t0041	2009	1	1	0	0	0	0	copy fasta	CEMIP2	chr9	71678366	71773513
CEMIP2_chr9_71678366_71773513	0/0	t0042	2003	1	1	0	0	0	0	copy fasta	CEMIP2	chr9	71678366	71773513
CEMIP2_chr9_71678366_71773513	0/0	t0043	2002	1	1	0	0	0	0	copy fasta	CEMIP2	chr9	71678366	71773513
CEMIP2_chr9_71678366_71773513	0/0	t0044	2020	1	1	0	0	0	0	copy fasta	CEMIP2	chr9	71678366	71773513
CEMIP2_chr9_71678366_71773513	0/0	t0045	2000	1	1	0	0	0	0	copy fasta	CEMIP2	chr9	71678366	71773513
CEMIP2_chr9_71678366_71773513	0/0	t0046	2009	1	0	0	0	1	0	copy fasta	CEMIP2	chr9	71678366	71773513
CEMIP2_chr9_71678366_71773513	0/0	t0047	2001	1	1	0	0	0	0	copy fasta	CEMIP2	chr9	71678366	71773513
CEMIP2_chr9_71678366_71773513	0/0	t0048	2009	1	1	0	0	0	0	copy fasta	CEMIP2	chr9	71678366	71773513
CEMIP2_chr9_71678366_71773513	0/0	t0049	2012	1	0	1	0	0	0	copy fasta	CEMIP2	chr9	71678366	71773513
CEMIP2_chr9_71678366_71773513	0/0	t0050	2016	1	0	0	1	0	0	copy fasta	CEMIP2	chr9	71678366	71773513
CEMIP2_chr9_71678366_71773513	0/0	t0051	2016	1	0	1	0	0	0	copy fasta	CEMIP2	chr9	71678366	71773513
CEMIP2_chr9_71678366_71773513	0/0	t0052	2017	1	0	0	1	0	0	copy fasta	CEMIP2	chr9	71678366	71773513
CEMIP2_chr9_71678366_71773513	0/0	t0053	2020	1	0	0	1	0	0	copy fasta	CEMIP2	chr9	71678366	71773513
CEMIP2_chr9_71678366_71773513	0/0	t0054	2012	1	0	0	1	0	0	copy fasta	CEMIP2	chr9	71678366	71773513
CEMIP2_chr9_71678366_71773513	0/0	t0055	2017	1	0	1	0	0	0	copy fasta	CEMIP2	chr9	71678366	71773513
CEMIP2_chr9_71678366_71773513	0/0	t0056	2016	1	0	1	0	0	0	copy fasta	CEMIP2	chr9	71678366	71773513