JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CEMIP2_chr9_71678366_71773513	0/0	t0057	2009	1	1	0	0	0	0	copy fasta	CEMIP2	chr9	71678366	71773513
CEMIP2_chr9_71678366_71773513	0/0	t0058	2015	1	1	0	0	0	0	copy fasta	CEMIP2	chr9	71678366	71773513
CEMIP_chr15_80774370_80956771	1/1	t0001	3268	172	51	36	51	7	25	copy fasta	CEMIP	chr15	80774370	80956771
CEMIP_chr15_80774370_80956771	0/0	t0002	3268	34	2	3	25	1	3	copy fasta	CEMIP	chr15	80774370	80956771
CEMIP_chr15_80774370_80956771	0/0	t0003	3268	11	9	2	0	0	0	copy fasta	CEMIP	chr15	80774370	80956771
CEMIP_chr15_80774370_80956771	0/0	t0004	3268	5	4	1	0	0	0	copy fasta	CEMIP	chr15	80774370	80956771
CEMIP_chr15_80774370_80956771	0/0	t0005	3268	4	4	0	0	0	0	copy fasta	CEMIP	chr15	80774370	80956771
CEMIP_chr15_80774370_80956771	0/0	t0006	3268	3	3	0	0	0	0	copy fasta	CEMIP	chr15	80774370	80956771
CEMIP_chr15_80774370_80956771	0/0	t0007	3268	3	3	0	0	0	0	copy fasta	CEMIP	chr15	80774370	80956771
CEMIP_chr15_80774370_80956771	0/0	t0008	3268	3	3	0	0	0	0	copy fasta	CEMIP	chr15	80774370	80956771
CEMIP_chr15_80774370_80956771	0/0	t0009	3268	2	0	2	0	0	0	copy fasta	CEMIP	chr15	80774370	80956771
CEMIP_chr15_80774370_80956771	0/0	t0010	3268	2	2	0	0	0	0	copy fasta	CEMIP	chr15	80774370	80956771
CEMIP_chr15_80774370_80956771	0/0	t0011	3268	2	2	0	0	0	0	copy fasta	CEMIP	chr15	80774370	80956771
CEMIP_chr15_80774370_80956771	0/0	t0012	3268	1	0	0	1	0	0	copy fasta	CEMIP	chr15	80774370	80956771
CEMIP_chr15_80774370_80956771	0/0	t0013	3268	1	0	1	0	0	0	copy fasta	CEMIP	chr15	80774370	80956771
CEMIP_chr15_80774370_80956771	0/0	t0014	3268	1	0	1	0	0	0	copy fasta	CEMIP	chr15	80774370	80956771
CEMIP_chr15_80774370_80956771	0/0	t0015	3268	1	0	0	1	0	0	copy fasta	CEMIP	chr15	80774370	80956771
CEMIP_chr15_80774370_80956771	0/0	t0016	3268	1	1	0	0	0	0	copy fasta	CEMIP	chr15	80774370	80956771
CEMIP_chr15_80774370_80956771	0/0	t0017	3268	1	1	0	0	0	0	copy fasta	CEMIP	chr15	80774370	80956771
CEMIP_chr15_80774370_80956771	0/0	t0018	3268	1	1	0	0	0	0	copy fasta	CEMIP	chr15	80774370	80956771
CEMIP_chr15_80774370_80956771	0/0	t0019	3268	1	0	0	1	0	0	copy fasta	CEMIP	chr15	80774370	80956771
CEMIP_chr15_80774370_80956771	0/0	t0020	3268	1	1	0	0	0	0	copy fasta	CEMIP	chr15	80774370	80956771
CEMIP_chr15_80774370_80956771	0/0	t0021	3268	1	1	0	0	0	0	copy fasta	CEMIP	chr15	80774370	80956771
CEMIP_chr15_80774370_80956771	0/0	t0022	3268	1	0	1	0	0	0	copy fasta	CEMIP	chr15	80774370	80956771
CEMIP_chr15_80774370_80956771	0/0	t0023	3268	1	0	0	1	0	0	copy fasta	CEMIP	chr15	80774370	80956771
CEMIP_chr15_80774370_80956771	0/0	t0024	3268	1	0	1	0	0	0	copy fasta	CEMIP	chr15	80774370	80956771
CEMP1_chr16_2525035_2536408	1/1	t0001	631	314	64	62	144	8	34	copy fasta	CEMP1	chr16	2525035	2536408
CEMP1_chr16_2525035_2536408	0/0	t0002	631	11	11	0	0	0	0	copy fasta	CEMP1	chr16	2525035	2536408
CEMP1_chr16_2525035_2536408	0/0	t0003	631	11	11	0	0	0	0	copy fasta	CEMP1	chr16	2525035	2536408
CEMP1_chr16_2525035_2536408	0/0	t0004	631	4	0	2	0	0	2	copy fasta	CEMP1	chr16	2525035	2536408
CEMP1_chr16_2525035_2536408	0/0	t0005	631	3	3	0	0	0	0	copy fasta	CEMP1	chr16	2525035	2536408
CEMP1_chr16_2525035_2536408	0/0	t0006	631	2	0	2	0	0	0	copy fasta	CEMP1	chr16	2525035	2536408
CEMP1_chr16_2525035_2536408	0/0	t0007	631	1	1	0	0	0	0	copy fasta	CEMP1	chr16	2525035	2536408
CEMP1_chr16_2525035_2536408	0/0	t0008	631	1	0	1	0	0	0	copy fasta	CEMP1	chr16	2525035	2536408
CEMP1_chr16_2525035_2536408	0/0	t0009	631	1	0	1	0	0	0	copy fasta	CEMP1	chr16	2525035	2536408
CENATAC_chr11_118993138_119020793	1/1	t0001	256	311	87	70	116	10	26	copy fasta	CENATAC	chr11	118993138	119020793
CENATAC_chr11_118993138_119020793	0/0	t0002	256	7	7	0	0	0	0	copy fasta	CENATAC	chr11	118993138	119020793
CEND1_chr11_782115_795090	0/1	t0001	1155	162	28	41	77	6	9	copy fasta	CEND1	chr11	782115	795090
CEND1_chr11_782115_795090	1/0	t0002	1156	114	24	24	45	7	13	copy fasta	CEND1	chr11	782115	795090
CEND1_chr11_782115_795090	0/0	t0003	1155	58	10	1	36	0	11	copy fasta	CEND1	chr11	782115	795090
CEND1_chr11_782115_795090	0/0	t0004	1155	29	12	5	9	1	2	copy fasta	CEND1	chr11	782115	795090
CEND1_chr11_782115_795090	0/0	t0005	1155	8	7	1	0	0	0	copy fasta	CEND1	chr11	782115	795090
CEND1_chr11_782115_795090	0/0	t0006	1156	8	8	0	0	0	0	copy fasta	CEND1	chr11	782115	795090
CEND1_chr11_782115_795090	0/0	t0007	1155	6	0	0	6	0	0	copy fasta	CEND1	chr11	782115	795090
CEND1_chr11_782115_795090	0/0	t0008	1152	6	5	1	0	0	0	copy fasta	CEND1	chr11	782115	795090
CEND1_chr11_782115_795090	0/0	t0009	1155	3	0	3	0	0	0	copy fasta	CEND1	chr11	782115	795090
CEND1_chr11_782115_795090	0/0	t0010	1155	2	0	0	1	0	1	copy fasta	CEND1	chr11	782115	795090
CEND1_chr11_782115_795090	0/0	t0011	1156	2	0	0	0	0	2	copy fasta	CEND1	chr11	782115	795090
CEND1_chr11_782115_795090	0/0	t0012	1155	2	0	0	2	0	0	copy fasta	CEND1	chr11	782115	795090
CEND1_chr11_782115_795090	0/0	t0013	1155	2	1	1	0	0	0	copy fasta	CEND1	chr11	782115	795090