JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CEP78_chr9_78231075_78284690	0/0	t0021	9137	3	3	0	0	0	0	copy fasta	CEP78	chr9	78231075	78284690
CEP78_chr9_78231075_78284690	0/0	t0022	9118	2	0	1	1	0	0	copy fasta	CEP78	chr9	78231075	78284690
CEP78_chr9_78231075_78284690	0/0	t0023	9123	2	2	0	0	0	0	copy fasta	CEP78	chr9	78231075	78284690
CEP78_chr9_78231075_78284690	0/0	t0024	9117	2	1	0	0	1	0	copy fasta	CEP78	chr9	78231075	78284690
CEP78_chr9_78231075_78284690	0/0	t0025	9117	2	0	2	0	0	0	copy fasta	CEP78	chr9	78231075	78284690
CEP78_chr9_78231075_78284690	0/0	t0026	9118	2	0	0	2	0	0	copy fasta	CEP78	chr9	78231075	78284690
CEP78_chr9_78231075_78284690	0/0	t0027	9121	2	2	0	0	0	0	copy fasta	CEP78	chr9	78231075	78284690
CEP78_chr9_78231075_78284690	0/0	t0028	9125	2	2	0	0	0	0	copy fasta	CEP78	chr9	78231075	78284690
CEP78_chr9_78231075_78284690	0/0	t0029	9116	2	2	0	0	0	0	copy fasta	CEP78	chr9	78231075	78284690
CEP78_chr9_78231075_78284690	0/0	t0030	9116	2	0	0	2	0	0	copy fasta	CEP78	chr9	78231075	78284690
CEP78_chr9_78231075_78284690	0/0	t0031	9116	2	0	0	0	0	2	copy fasta	CEP78	chr9	78231075	78284690
CEP78_chr9_78231075_78284690	0/0	t0032	9112	2	2	0	0	0	0	copy fasta	CEP78	chr9	78231075	78284690
CEP78_chr9_78231075_78284690	0/0	t0033	9131	2	2	0	0	0	0	copy fasta	CEP78	chr9	78231075	78284690
CEP78_chr9_78231075_78284690	0/0	t0034	9122	2	1	0	1	0	0	copy fasta	CEP78	chr9	78231075	78284690
CEP78_chr9_78231075_78284690	0/0	t0035	9121	2	2	0	0	0	0	copy fasta	CEP78	chr9	78231075	78284690
CEP78_chr9_78231075_78284690	0/0	t0036	9116	1	0	0	1	0	0	copy fasta	CEP78	chr9	78231075	78284690
CEP78_chr9_78231075_78284690	0/0	t0037	9117	1	0	1	0	0	0	copy fasta	CEP78	chr9	78231075	78284690
CEP78_chr9_78231075_78284690	0/0	t0038	9132	1	1	0	0	0	0	copy fasta	CEP78	chr9	78231075	78284690
CEP78_chr9_78231075_78284690	0/0	t0039	9121	1	1	0	0	0	0	copy fasta	CEP78	chr9	78231075	78284690
CEP78_chr9_78231075_78284690	0/0	t0040	9121	1	0	1	0	0	0	copy fasta	CEP78	chr9	78231075	78284690
CEP78_chr9_78231075_78284690	0/0	t0041	9121	1	1	0	0	0	0	copy fasta	CEP78	chr9	78231075	78284690
CEP78_chr9_78231075_78284690	0/0	t0042	9121	1	0	1	0	0	0	copy fasta	CEP78	chr9	78231075	78284690
CEP78_chr9_78231075_78284690	0/0	t0043	9119	1	1	0	0	0	0	copy fasta	CEP78	chr9	78231075	78284690
CEP78_chr9_78231075_78284690	0/0	t0044	9119	1	1	0	0	0	0	copy fasta	CEP78	chr9	78231075	78284690
CEP78_chr9_78231075_78284690	0/0	t0045	9118	1	1	0	0	0	0	copy fasta	CEP78	chr9	78231075	78284690
CEP78_chr9_78231075_78284690	0/0	t0046	9123	1	1	0	0	0	0	copy fasta	CEP78	chr9	78231075	78284690
CEP78_chr9_78231075_78284690	0/0	t0047	9123	1	1	0	0	0	0	copy fasta	CEP78	chr9	78231075	78284690
CEP78_chr9_78231075_78284690	0/0	t0048	9120	1	0	1	0	0	0	copy fasta	CEP78	chr9	78231075	78284690
CEP78_chr9_78231075_78284690	0/0	t0049	9121	1	1	0	0	0	0	copy fasta	CEP78	chr9	78231075	78284690
CEP78_chr9_78231075_78284690	0/0	t0050	9120	1	0	1	0	0	0	copy fasta	CEP78	chr9	78231075	78284690
CEP78_chr9_78231075_78284690	0/0	t0051	9119	1	0	0	0	0	1	copy fasta	CEP78	chr9	78231075	78284690
CEP78_chr9_78231075_78284690	0/0	t0052	9118	1	1	0	0	0	0	copy fasta	CEP78	chr9	78231075	78284690
CEP78_chr9_78231075_78284690	0/0	t0053	9117	1	0	1	0	0	0	copy fasta	CEP78	chr9	78231075	78284690
CEP78_chr9_78231075_78284690	0/0	t0054	9123	1	0	1	0	0	0	copy fasta	CEP78	chr9	78231075	78284690
CEP78_chr9_78231075_78284690	0/0	t0055	9122	1	0	0	0	0	1	copy fasta	CEP78	chr9	78231075	78284690
CEP78_chr9_78231075_78284690	0/0	t0056	9122	1	1	0	0	0	0	copy fasta	CEP78	chr9	78231075	78284690
CEP78_chr9_78231075_78284690	0/0	t0057	9118	1	0	1	0	0	0	copy fasta	CEP78	chr9	78231075	78284690
CEP78_chr9_78231075_78284690	0/0	t0058	9117	1	0	0	1	0	0	copy fasta	CEP78	chr9	78231075	78284690
CEP78_chr9_78231075_78284690	0/0	t0059	9117	1	0	0	1	0	0	copy fasta	CEP78	chr9	78231075	78284690
CEP78_chr9_78231075_78284690	0/0	t0060	9116	1	1	0	0	0	0	copy fasta	CEP78	chr9	78231075	78284690
CEP78_chr9_78231075_78284690	0/0	t0061	9121	1	1	0	0	0	0	copy fasta	CEP78	chr9	78231075	78284690
CEP78_chr9_78231075_78284690	0/0	t0062	9121	1	1	0	0	0	0	copy fasta	CEP78	chr9	78231075	78284690
CEP78_chr9_78231075_78284690	0/0	t0063	9122	1	1	0	0	0	0	copy fasta	CEP78	chr9	78231075	78284690
CEP78_chr9_78231075_78284690	0/0	t0064	9120	1	0	1	0	0	0	copy fasta	CEP78	chr9	78231075	78284690
CEP78_chr9_78231075_78284690	0/0	t0065	9116	1	0	1	0	0	0	copy fasta	CEP78	chr9	78231075	78284690
CEP78_chr9_78231075_78284690	0/0	t0066	9116	1	0	0	1	0	0	copy fasta	CEP78	chr9	78231075	78284690
CEP78_chr9_78231075_78284690	0/0	t0067	9116	1	1	0	0	0	0	copy fasta	CEP78	chr9	78231075	78284690
CEP78_chr9_78231075_78284690	0/0	t0068	9116	1	0	0	1	0	0	copy fasta	CEP78	chr9	78231075	78284690
CEP78_chr9_78231075_78284690	0/0	t0069	9116	1	0	0	1	0	0	copy fasta	CEP78	chr9	78231075	78284690
CEP78_chr9_78231075_78284690	0/0	t0070	9117	1	0	0	1	0	0	copy fasta	CEP78	chr9	78231075	78284690