JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CEP78_chr9_78231075_78284690	0/0	t0071	9121	1	0	0	1	0	0	copy fasta	CEP78	chr9	78231075	78284690
CEP78_chr9_78231075_78284690	0/0	t0072	9116	1	0	0	1	0	0	copy fasta	CEP78	chr9	78231075	78284690
CEP78_chr9_78231075_78284690	0/0	t0073	9116	1	1	0	0	0	0	copy fasta	CEP78	chr9	78231075	78284690
CEP78_chr9_78231075_78284690	0/0	t0074	9116	1	0	0	1	0	0	copy fasta	CEP78	chr9	78231075	78284690
CEP78_chr9_78231075_78284690	0/0	t0075	9115	1	0	0	1	0	0	copy fasta	CEP78	chr9	78231075	78284690
CEP78_chr9_78231075_78284690	0/0	t0076	9116	1	0	0	1	0	0	copy fasta	CEP78	chr9	78231075	78284690
CEP78_chr9_78231075_78284690	0/0	t0077	9116	1	0	0	1	0	0	copy fasta	CEP78	chr9	78231075	78284690
CEP78_chr9_78231075_78284690	0/0	t0078	9116	1	1	0	0	0	0	copy fasta	CEP78	chr9	78231075	78284690
CEP78_chr9_78231075_78284690	0/0	t0079	9117	1	0	0	0	0	1	copy fasta	CEP78	chr9	78231075	78284690
CEP78_chr9_78231075_78284690	0/0	t0080	9126	1	1	0	0	0	0	copy fasta	CEP78	chr9	78231075	78284690
CEP78_chr9_78231075_78284690	0/0	t0081	9118	1	1	0	0	0	0	copy fasta	CEP78	chr9	78231075	78284690
CEP78_chr9_78231075_78284690	0/0	t0082	9116	1	0	0	1	0	0	copy fasta	CEP78	chr9	78231075	78284690
CEP78_chr9_78231075_78284690	0/0	t0083	9117	1	0	0	0	1	0	copy fasta	CEP78	chr9	78231075	78284690
CEP78_chr9_78231075_78284690	0/0	t0084	9108	1	0	0	0	0	1	copy fasta	CEP78	chr9	78231075	78284690
CEP78_chr9_78231075_78284690	0/0	t0085	9118	1	0	0	1	0	0	copy fasta	CEP78	chr9	78231075	78284690
CEP78_chr9_78231075_78284690	0/0	t0086	9116	1	0	0	1	0	0	copy fasta	CEP78	chr9	78231075	78284690
CEP78_chr9_78231075_78284690	0/0	t0087	9112	1	1	0	0	0	0	copy fasta	CEP78	chr9	78231075	78284690
CEP78_chr9_78231075_78284690	0/0	t0088	9121	1	0	0	0	1	0	copy fasta	CEP78	chr9	78231075	78284690
CEP78_chr9_78231075_78284690	0/0	t0089	9130	1	0	1	0	0	0	copy fasta	CEP78	chr9	78231075	78284690
CEP78_chr9_78231075_78284690	0/0	t0090	9137	1	1	0	0	0	0	copy fasta	CEP78	chr9	78231075	78284690
CEP78_chr9_78231075_78284690	0/0	t0091	9120	1	1	0	0	0	0	copy fasta	CEP78	chr9	78231075	78284690
CEP78_chr9_78231075_78284690	0/0	t0092	9123	1	0	1	0	0	0	copy fasta	CEP78	chr9	78231075	78284690
CEP78_chr9_78231075_78284690	0/0	t0093	9122	1	0	1	0	0	0	copy fasta	CEP78	chr9	78231075	78284690
CEP78_chr9_78231075_78284690	0/0	t0094	9120	1	1	0	0	0	0	copy fasta	CEP78	chr9	78231075	78284690
CEP78_chr9_78231075_78284690	0/0	t0095	9122	1	0	0	1	0	0	copy fasta	CEP78	chr9	78231075	78284690
CEP78_chr9_78231075_78284690	0/0	t0096	9120	1	1	0	0	0	0	copy fasta	CEP78	chr9	78231075	78284690
CEP83_chr12_94302698_94464867	1/0	t0001	1581	285	57	53	140	7	27	copy fasta	CEP83	chr12	94302698	94464867
CEP83_chr12_94302698_94464867	0/1	t0002	1581	22	1	2	14	1	3	copy fasta	CEP83	chr12	94302698	94464867
CEP83_chr12_94302698_94464867	0/0	t0003	1581	20	17	3	0	0	0	copy fasta	CEP83	chr12	94302698	94464867
CEP83_chr12_94302698_94464867	0/0	t0004	1584	8	0	1	7	0	0	copy fasta	CEP83	chr12	94302698	94464867
CEP83_chr12_94302698_94464867	0/0	t0005	1580	7	0	3	0	2	2	copy fasta	CEP83	chr12	94302698	94464867
CEP83_chr12_94302698_94464867	0/0	t0006	1581	4	0	1	3	0	0	copy fasta	CEP83	chr12	94302698	94464867
CEP83_chr12_94302698_94464867	0/0	t0007	1581	4	0	0	4	0	0	copy fasta	CEP83	chr12	94302698	94464867
CEP83_chr12_94302698_94464867	0/0	t0008	1585	3	3	0	0	0	0	copy fasta	CEP83	chr12	94302698	94464867
CEP83_chr12_94302698_94464867	0/0	t0009	1581	3	3	0	0	0	0	copy fasta	CEP83	chr12	94302698	94464867
CEP83_chr12_94302698_94464867	0/0	t0010	1581	3	3	0	0	0	0	copy fasta	CEP83	chr12	94302698	94464867
CEP83_chr12_94302698_94464867	0/0	t0011	1581	3	0	3	0	0	0	copy fasta	CEP83	chr12	94302698	94464867
CEP83_chr12_94302698_94464867	0/0	t0012	1580	1	0	0	1	0	0	copy fasta	CEP83	chr12	94302698	94464867
CEP83_chr12_94302698_94464867	0/0	t0013	1581	1	0	0	1	0	0	copy fasta	CEP83	chr12	94302698	94464867
CEP85L_chr6_118455772_118656591	0/0	t0001	4957	80	8	17	40	5	10	copy fasta	CEP85L	chr6	118455772	118656591
CEP85L_chr6_118455772_118656591	0/1	t0002	4957	76	21	13	29	2	10	copy fasta	CEP85L	chr6	118455772	118656591
CEP85L_chr6_118455772_118656591	0/0	t0003	4957	39	0	23	8	4	4	copy fasta	CEP85L	chr6	118455772	118656591
CEP85L_chr6_118455772_118656591	0/0	t0004	4957	15	0	5	10	0	0	copy fasta	CEP85L	chr6	118455772	118656591
CEP85L_chr6_118455772_118656591	0/0	t0005	4957	15	6	2	2	0	5	copy fasta	CEP85L	chr6	118455772	118656591
CEP85L_chr6_118455772_118656591	0/0	t0006	4957	14	10	2	0	0	2	copy fasta	CEP85L	chr6	118455772	118656591
CEP85L_chr6_118455772_118656591	0/0	t0007	4957	10	4	4	1	1	0	copy fasta	CEP85L	chr6	118455772	118656591
CEP85L_chr6_118455772_118656591	0/0	t0008	4957	10	9	1	0	0	0	copy fasta	CEP85L	chr6	118455772	118656591
CEP85L_chr6_118455772_118656591	0/0	t0009	4957	8	8	0	0	0	0	copy fasta	CEP85L	chr6	118455772	118656591
CEP85L_chr6_118455772_118656591	0/0	t0010	4957	7	6	1	0	0	0	copy fasta	CEP85L	chr6	118455772	118656591
CEP85L_chr6_118455772_118656591	0/0	t0011	4956	4	4	0	0	0	0	copy fasta	CEP85L	chr6	118455772	118656591