JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CGRRF1_chr14_54504906_54544292	0/0	t0009	964	2	2	0	0	0	0	copy fasta	CGRRF1	chr14	54504906	54544292
CGRRF1_chr14_54504906_54544292	0/0	t0010	964	2	0	0	1	0	1	copy fasta	CGRRF1	chr14	54504906	54544292
CGRRF1_chr14_54504906_54544292	0/0	t0011	964	1	1	0	0	0	0	copy fasta	CGRRF1	chr14	54504906	54544292
CH25H_chr10_89200629_89212317	1/1	t0001	871	221	72	53	54	15	25	copy fasta	CH25H	chr10	89200629	89212317
CH25H_chr10_89200629_89212317	0/0	t0002	871	132	1	17	95	1	18	copy fasta	CH25H	chr10	89200629	89212317
CH25H_chr10_89200629_89212317	0/0	t0003	871	14	13	1	0	0	0	copy fasta	CH25H	chr10	89200629	89212317
CH25H_chr10_89200629_89212317	0/0	t0004	871	3	3	0	0	0	0	copy fasta	CH25H	chr10	89200629	89212317
CH25H_chr10_89200629_89212317	0/0	t0005	871	3	0	3	0	0	0	copy fasta	CH25H	chr10	89200629	89212317
CH25H_chr10_89200629_89212317	0/0	t0006	871	3	0	0	3	0	0	copy fasta	CH25H	chr10	89200629	89212317
CH25H_chr10_89200629_89212317	0/0	t0007	871	2	2	0	0	0	0	copy fasta	CH25H	chr10	89200629	89212317
CH25H_chr10_89200629_89212317	0/0	t0008	871	1	0	0	0	0	1	copy fasta	CH25H	chr10	89200629	89212317
CH25H_chr10_89200629_89212317	0/0	t0009	871	1	1	0	0	0	0	copy fasta	CH25H	chr10	89200629	89212317
CH25H_chr10_89200629_89212317	0/0	t0010	871	1	0	0	1	0	0	copy fasta	CH25H	chr10	89200629	89212317
CH25H_chr10_89200629_89212317	0/0	t0011	871	1	1	0	0	0	0	copy fasta	CH25H	chr10	89200629	89212317
CH25H_chr10_89200629_89212317	0/0	t0012	871	1	1	0	0	0	0	copy fasta	CH25H	chr10	89200629	89212317
CH25H_chr10_89200629_89212317	0/0	t0013	871	1	0	0	1	0	0	copy fasta	CH25H	chr10	89200629	89212317
CHAC1_chr15_40948471_40961512	1/1	t0001	852	315	85	52	134	8	34	copy fasta	CHAC1	chr15	40948471	40961512
CHAC1_chr15_40948471_40961512	0/0	t0002	852	97	6	22	54	7	8	copy fasta	CHAC1	chr15	40948471	40961512
CHAC1_chr15_40948471_40961512	0/0	t0003	852	2	0	0	2	0	0	copy fasta	CHAC1	chr15	40948471	40961512
CHAC1_chr15_40948471_40961512	0/0	t0004	852	2	0	0	0	1	1	copy fasta	CHAC1	chr15	40948471	40961512
CHAC1_chr15_40948471_40961512	0/0	t0005	852	1	0	0	0	0	1	copy fasta	CHAC1	chr15	40948471	40961512
CHAC1_chr15_40948471_40961512	0/0	t0006	852	1	0	0	1	0	0	copy fasta	CHAC1	chr15	40948471	40961512
CHAC1_chr15_40948471_40961512	0/0	t0007	852	1	0	0	1	0	0	copy fasta	CHAC1	chr15	40948471	40961512
CHAC1_chr15_40948471_40961512	0/0	t0008	852	1	1	0	0	0	0	copy fasta	CHAC1	chr15	40948471	40961512
CHAC2_chr2_53762804_53780196	1/0	t0001	755	350	81	44	174	16	34	copy fasta	CHAC2	chr2	53762804	53780196
CHAC2_chr2_53762804_53780196	0/1	t0002	755	68	10	19	28	0	10	copy fasta	CHAC2	chr2	53762804	53780196
CHAC2_chr2_53762804_53780196	0/0	t0003	755	6	5	1	0	0	0	copy fasta	CHAC2	chr2	53762804	53780196
CHAC2_chr2_53762804_53780196	0/0	t0004	755	1	0	0	1	0	0	copy fasta	CHAC2	chr2	53762804	53780196
CHAC2_chr2_53762804_53780196	0/0	t0005	755	1	0	0	1	0	0	copy fasta	CHAC2	chr2	53762804	53780196
CHADL_chr22_41224513_41245931	1/1	t0001	242	387	80	68	172	18	47	copy fasta	CHADL	chr22	41224513	41245931
CHADL_chr22_41224513_41245931	0/0	t0002	242	25	14	8	3	0	0	copy fasta	CHADL	chr22	41224513	41245931
CHADL_chr22_41224513_41245931	0/0	t0003	242	1	0	0	0	0	1	copy fasta	CHADL	chr22	41224513	41245931
CHADL_chr22_41224513_41245931	0/0	t0004	242	1	0	0	1	0	0	copy fasta	CHADL	chr22	41224513	41245931
CHAD_chr17_50459496_50473880	1/0	t0001	626	187	20	29	109	10	18	copy fasta	CHAD	chr17	50459496	50473880
CHAD_chr17_50459496_50473880	0/0	t0002	627	54	13	13	16	2	10	copy fasta	CHAD	chr17	50459496	50473880
CHAD_chr17_50459496_50473880	0/1	t0003	630	51	19	16	10	0	5	copy fasta	CHAD	chr17	50459496	50473880
CHAD_chr17_50459496_50473880	0/0	t0004	629	50	14	11	16	4	5	copy fasta	CHAD	chr17	50459496	50473880
CHAD_chr17_50459496_50473880	0/0	t0005	627	20	5	3	9	0	3	copy fasta	CHAD	chr17	50459496	50473880
CHAD_chr17_50459496_50473880	0/0	t0006	627	5	5	0	0	0	0	copy fasta	CHAD	chr17	50459496	50473880
CHAD_chr17_50459496_50473880	0/0	t0007	626	5	4	1	0	0	0	copy fasta	CHAD	chr17	50459496	50473880
CHAD_chr17_50459496_50473880	0/0	t0008	626	3	0	0	3	0	0	copy fasta	CHAD	chr17	50459496	50473880
CHAD_chr17_50459496_50473880	0/0	t0009	629	3	3	0	0	0	0	copy fasta	CHAD	chr17	50459496	50473880
CHAD_chr17_50459496_50473880	0/0	t0010	627	2	0	2	0	0	0	copy fasta	CHAD	chr17	50459496	50473880
CHAD_chr17_50459496_50473880	0/0	t0011	627	1	0	0	0	0	1	copy fasta	CHAD	chr17	50459496	50473880
CHAD_chr17_50459496_50473880	0/0	t0012	626	1	0	0	1	0	0	copy fasta	CHAD	chr17	50459496	50473880
CHAD_chr17_50459496_50473880	0/0	t0013	630	1	0	1	0	0	0	copy fasta	CHAD	chr17	50459496	50473880
CHAD_chr17_50459496_50473880	0/0	t0014	627	1	1	0	0	0	0	copy fasta	CHAD	chr17	50459496	50473880
CHAD_chr17_50459496_50473880	0/0	t0015	626	1	1	0	0	0	0	copy fasta	CHAD	chr17	50459496	50473880
CHAD_chr17_50459496_50473880	0/0	t0016	630	1	1	0	0	0	0	copy fasta	CHAD	chr17	50459496	50473880
CHAF1A_chr19_4397640_4448397	0/1	t0001	496	169	38	24	90	4	12	copy fasta	CHAF1A	chr19	4397640	4448397