JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CHCHD7_chr8_56206789_56223809	0/0	t0009	1440	1	0	0	1	0	0	copy fasta	CHCHD7	chr8	56206789	56223809
CHCT1_chr17_60417489_60436426	1/1	t0001	265	322	96	70	130	4	20	copy fasta	CHCT1	chr17	60417489	60436426
CHD1L_chr1_147237684_147300762	1/0	t0001	274	290	67	34	159	12	17	copy fasta	CHD1L	chr1	147237684	147300762
CHD1L_chr1_147237684_147300762	0/1	t0002	274	72	15	19	16	2	19	copy fasta	CHD1L	chr1	147237684	147300762
CHD1L_chr1_147237684_147300762	0/0	t0003	274	56	12	21	17	0	6	copy fasta	CHD1L	chr1	147237684	147300762
CHD1_chr5_98848985_98934007	1/1	t0001	3013	179	30	36	90	3	18	copy fasta	CHD1	chr5	98848985	98934007
CHD1_chr5_98848985_98934007	0/0	t0002	3023	58	26	17	12	1	2	copy fasta	CHD1	chr5	98848985	98934007
CHD1_chr5_98848985_98934007	0/0	t0003	3013	18	0	3	9	3	3	copy fasta	CHD1	chr5	98848985	98934007
CHD1_chr5_98848985_98934007	0/0	t0004	3013	13	0	0	11	0	2	copy fasta	CHD1	chr5	98848985	98934007
CHD1_chr5_98848985_98934007	0/0	t0005	3020	10	10	0	0	0	0	copy fasta	CHD1	chr5	98848985	98934007
CHD1_chr5_98848985_98934007	0/0	t0006	3023	9	8	1	0	0	0	copy fasta	CHD1	chr5	98848985	98934007
CHD1_chr5_98848985_98934007	0/0	t0007	3020	4	0	0	3	0	1	copy fasta	CHD1	chr5	98848985	98934007
CHD1_chr5_98848985_98934007	0/0	t0008	3013	4	0	0	4	0	0	copy fasta	CHD1	chr5	98848985	98934007
CHD1_chr5_98848985_98934007	0/0	t0009	3018	4	0	0	0	1	3	copy fasta	CHD1	chr5	98848985	98934007
CHD1_chr5_98848985_98934007	0/0	t0010	3023	4	0	0	4	0	0	copy fasta	CHD1	chr5	98848985	98934007
CHD1_chr5_98848985_98934007	0/0	t0011	3023	3	0	1	0	2	0	copy fasta	CHD1	chr5	98848985	98934007
CHD1_chr5_98848985_98934007	0/0	t0012	3023	3	3	0	0	0	0	copy fasta	CHD1	chr5	98848985	98934007
CHD1_chr5_98848985_98934007	0/0	t0013	3023	3	3	0	0	0	0	copy fasta	CHD1	chr5	98848985	98934007
CHD1_chr5_98848985_98934007	0/0	t0014	3013	3	0	0	3	0	0	copy fasta	CHD1	chr5	98848985	98934007
CHD1_chr5_98848985_98934007	0/0	t0015	3013	2	0	0	0	0	2	copy fasta	CHD1	chr5	98848985	98934007
CHD1_chr5_98848985_98934007	0/0	t0016	3023	2	2	0	0	0	0	copy fasta	CHD1	chr5	98848985	98934007
CHD1_chr5_98848985_98934007	0/0	t0017	3023	2	2	0	0	0	0	copy fasta	CHD1	chr5	98848985	98934007
CHD1_chr5_98848985_98934007	0/0	t0018	3020	1	0	0	1	0	0	copy fasta	CHD1	chr5	98848985	98934007
CHD1_chr5_98848985_98934007	0/0	t0019	3013	1	0	0	1	0	0	copy fasta	CHD1	chr5	98848985	98934007
CHD1_chr5_98848985_98934007	0/0	t0020	3023	1	1	0	0	0	0	copy fasta	CHD1	chr5	98848985	98934007
CHD1_chr5_98848985_98934007	0/0	t0021	3013	1	0	1	0	0	0	copy fasta	CHD1	chr5	98848985	98934007
CHD1_chr5_98848985_98934007	0/0	t0022	3013	1	0	1	0	0	0	copy fasta	CHD1	chr5	98848985	98934007
CHD1_chr5_98848985_98934007	0/0	t0023	3013	1	0	0	1	0	0	copy fasta	CHD1	chr5	98848985	98934007
CHD1_chr5_98848985_98934007	0/0	t0024	3023	1	1	0	0	0	0	copy fasta	CHD1	chr5	98848985	98934007
CHD1_chr5_98848985_98934007	0/0	t0025	3023	1	0	1	0	0	0	copy fasta	CHD1	chr5	98848985	98934007
CHD1_chr5_98848985_98934007	0/0	t0026	3013	1	1	0	0	0	0	copy fasta	CHD1	chr5	98848985	98934007
CHD1_chr5_98848985_98934007	0/0	t0027	3013	1	0	1	0	0	0	copy fasta	CHD1	chr5	98848985	98934007
CHD1_chr5_98848985_98934007	0/0	t0028	3023	1	1	0	0	0	0	copy fasta	CHD1	chr5	98848985	98934007
CHD1_chr5_98848985_98934007	0/0	t0029	3013	1	0	0	1	0	0	copy fasta	CHD1	chr5	98848985	98934007
CHD1_chr5_98848985_98934007	0/0	t0030	3013	1	0	0	0	0	1	copy fasta	CHD1	chr5	98848985	98934007
CHD2_chr15_92895324_93032996	0/1	t0001	3867	154	10	33	83	6	21	copy fasta	CHD2	chr15	92895324	93032996
CHD2_chr15_92895324_93032996	0/0	t0002	3864	26	20	3	2	0	1	copy fasta	CHD2	chr15	92895324	93032996
CHD2_chr15_92895324_93032996	1/0	t0003	3864	25	17	4	0	2	1	copy fasta	CHD2	chr15	92895324	93032996
CHD2_chr15_92895324_93032996	0/0	t0004	3861	17	3	2	1	4	7	copy fasta	CHD2	chr15	92895324	93032996
CHD2_chr15_92895324_93032996	0/0	t0005	3867	15	13	2	0	0	0	copy fasta	CHD2	chr15	92895324	93032996
CHD2_chr15_92895324_93032996	0/0	t0006	3864	14	1	12	1	0	0	copy fasta	CHD2	chr15	92895324	93032996
CHD2_chr15_92895324_93032996	0/0	t0007	3864	10	3	4	0	3	0	copy fasta	CHD2	chr15	92895324	93032996
CHD2_chr15_92895324_93032996	0/0	t0008	3867	8	0	3	0	0	5	copy fasta	CHD2	chr15	92895324	93032996
CHD2_chr15_92895324_93032996	0/0	t0009	3867	8	0	3	5	0	0	copy fasta	CHD2	chr15	92895324	93032996
CHD2_chr15_92895324_93032996	0/0	t0010	3864	6	0	0	6	0	0	copy fasta	CHD2	chr15	92895324	93032996
CHD2_chr15_92895324_93032996	0/0	t0011	3867	5	0	2	3	0	0	copy fasta	CHD2	chr15	92895324	93032996
CHD2_chr15_92895324_93032996	0/0	t0012	3864	4	1	2	0	0	1	copy fasta	CHD2	chr15	92895324	93032996
CHD2_chr15_92895324_93032996	0/0	t0013	3864	2	1	1	0	0	0	copy fasta	CHD2	chr15	92895324	93032996
CHD2_chr15_92895324_93032996	0/0	t0014	3864	1	1	0	0	0	0	copy fasta	CHD2	chr15	92895324	93032996
CHD2_chr15_92895324_93032996	0/0	t0015	3861	1	0	1	0	0	0	copy fasta	CHD2	chr15	92895324	93032996