JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CLN5_chr13_76987081_77010117	0/0	t0021	4168	1	0	0	1	0	0	copy fasta	CLN5	chr13	76987081	77010117
CLN5_chr13_76987081_77010117	0/0	t0022	4167	1	0	0	1	0	0	copy fasta	CLN5	chr13	76987081	77010117
CLN5_chr13_76987081_77010117	0/0	t0023	4156	1	0	1	0	0	0	copy fasta	CLN5	chr13	76987081	77010117
CLN5_chr13_76987081_77010117	0/0	t0024	4167	1	0	1	0	0	0	copy fasta	CLN5	chr13	76987081	77010117
CLN5_chr13_76987081_77010117	0/0	t0025	4168	1	1	0	0	0	0	copy fasta	CLN5	chr13	76987081	77010117
CLN5_chr13_76987081_77010117	0/0	t0026	4167	1	0	0	1	0	0	copy fasta	CLN5	chr13	76987081	77010117
CLN5_chr13_76987081_77010117	0/0	t0027	4167	1	1	0	0	0	0	copy fasta	CLN5	chr13	76987081	77010117
CLN5_chr13_76987081_77010117	0/0	t0028	4167	1	0	0	1	0	0	copy fasta	CLN5	chr13	76987081	77010117
CLN5_chr13_76987081_77010117	0/0	t0029	4167	1	0	0	1	0	0	copy fasta	CLN5	chr13	76987081	77010117
CLN5_chr13_76987081_77010117	0/0	t0030	4167	1	1	0	0	0	0	copy fasta	CLN5	chr13	76987081	77010117
CLN5_chr13_76987081_77010117	0/0	t0031	4167	1	0	1	0	0	0	copy fasta	CLN5	chr13	76987081	77010117
CLN5_chr13_76987081_77010117	0/0	t0032	4167	1	1	0	0	0	0	copy fasta	CLN5	chr13	76987081	77010117
CLN5_chr13_76987081_77010117	0/0	t0033	4167	1	0	0	1	0	0	copy fasta	CLN5	chr13	76987081	77010117
CLN5_chr13_76987081_77010117	0/0	t0034	4164	1	0	0	1	0	0	copy fasta	CLN5	chr13	76987081	77010117
CLN5_chr13_76987081_77010117	0/0	t0035	4164	1	0	0	1	0	0	copy fasta	CLN5	chr13	76987081	77010117
CLN5_chr13_76987081_77010117	0/0	t0036	4166	1	1	0	0	0	0	copy fasta	CLN5	chr13	76987081	77010117
CLN5_chr13_76987081_77010117	0/0	t0037	4167	1	1	0	0	0	0	copy fasta	CLN5	chr13	76987081	77010117
CLN5_chr13_76987081_77010117	0/0	t0038	4165	1	0	1	0	0	0	copy fasta	CLN5	chr13	76987081	77010117
CLN5_chr13_76987081_77010117	0/0	t0039	4168	1	1	0	0	0	0	copy fasta	CLN5	chr13	76987081	77010117
CLN5_chr13_76987081_77010117	0/0	t0040	4165	1	0	0	1	0	0	copy fasta	CLN5	chr13	76987081	77010117
CLN5_chr13_76987081_77010117	0/0	t0041	4164	1	0	0	1	0	0	copy fasta	CLN5	chr13	76987081	77010117
CLN5_chr13_76987081_77010117	0/0	t0042	4168	1	0	1	0	0	0	copy fasta	CLN5	chr13	76987081	77010117
CLN5_chr13_76987081_77010117	0/0	t0043	4167	1	0	1	0	0	0	copy fasta	CLN5	chr13	76987081	77010117
CLN6_chr15_68201992_68234728	0/0	t0001	1295	138	4	29	75	7	23	copy fasta	CLN6	chr15	68201992	68234728
CLN6_chr15_68201992_68234728	0/1	t0002	1289	101	26	27	30	5	12	copy fasta	CLN6	chr15	68201992	68234728
CLN6_chr15_68201992_68234728	1/0	t0003	1293	18	16	1	0	0	0	copy fasta	CLN6	chr15	68201992	68234728
CLN6_chr15_68201992_68234728	0/0	t0004	1293	15	14	1	0	0	0	copy fasta	CLN6	chr15	68201992	68234728
CLN6_chr15_68201992_68234728	0/0	t0005	1299	11	11	0	0	0	0	copy fasta	CLN6	chr15	68201992	68234728
CLN6_chr15_68201992_68234728	0/0	t0006	1293	8	8	0	0	0	0	copy fasta	CLN6	chr15	68201992	68234728
CLN6_chr15_68201992_68234728	0/0	t0007	1298	7	0	0	7	0	0	copy fasta	CLN6	chr15	68201992	68234728
CLN6_chr15_68201992_68234728	0/0	t0008	1295	4	3	0	1	0	0	copy fasta	CLN6	chr15	68201992	68234728
CLN6_chr15_68201992_68234728	0/0	t0009	1289	3	2	0	0	0	1	copy fasta	CLN6	chr15	68201992	68234728
CLN6_chr15_68201992_68234728	0/0	t0010	1291	3	2	0	0	0	1	copy fasta	CLN6	chr15	68201992	68234728
CLN6_chr15_68201992_68234728	0/0	t0011	1301	3	3	0	0	0	0	copy fasta	CLN6	chr15	68201992	68234728
CLN6_chr15_68201992_68234728	0/0	t0012	1289	2	2	0	0	0	0	copy fasta	CLN6	chr15	68201992	68234728
CLN6_chr15_68201992_68234728	0/0	t0013	1289	2	0	0	1	0	1	copy fasta	CLN6	chr15	68201992	68234728
CLN6_chr15_68201992_68234728	0/0	t0014	1289	2	2	0	0	0	0	copy fasta	CLN6	chr15	68201992	68234728
CLN6_chr15_68201992_68234728	0/0	t0015	1289	1	1	0	0	0	0	copy fasta	CLN6	chr15	68201992	68234728
CLN6_chr15_68201992_68234728	0/0	t0016	1289	1	0	1	0	0	0	copy fasta	CLN6	chr15	68201992	68234728
CLN6_chr15_68201992_68234728	0/0	t0017	1293	1	1	0	0	0	0	copy fasta	CLN6	chr15	68201992	68234728
CLN6_chr15_68201992_68234728	0/0	t0018	1295	1	0	0	1	0	0	copy fasta	CLN6	chr15	68201992	68234728
CLN6_chr15_68201992_68234728	0/0	t0019	1295	1	0	0	1	0	0	copy fasta	CLN6	chr15	68201992	68234728
CLN6_chr15_68201992_68234728	0/0	t0020	1295	1	1	0	0	0	0	copy fasta	CLN6	chr15	68201992	68234728
CLN6_chr15_68201992_68234728	0/0	t0021	1289	1	0	1	0	0	0	copy fasta	CLN6	chr15	68201992	68234728
CLN8_chr8_1758789_1791570	0/0	t0001	6229	100	23	15	47	4	11	copy fasta	CLN8	chr8	1758789	1791570
CLN8_chr8_1758789_1791570	0/0	t0002	6224	52	2	12	33	2	3	copy fasta	CLN8	chr8	1758789	1791570
CLN8_chr8_1758789_1791570	0/0	t0003	6230	32	9	3	20	0	0	copy fasta	CLN8	chr8	1758789	1791570
CLN8_chr8_1758789_1791570	0/0	t0004	6229	21	0	6	7	2	6	copy fasta	CLN8	chr8	1758789	1791570
CLN8_chr8_1758789_1791570	0/0	t0005	6224	19	0	1	11	0	7	copy fasta	CLN8	chr8	1758789	1791570
CLN8_chr8_1758789_1791570	0/0	t0006	6224	10	0	0	10	0	0	copy fasta	CLN8	chr8	1758789	1791570