JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CLN8_chr8_1758789_1791570	0/0	t0007	6229	7	6	1	0	0	0	copy fasta	CLN8	chr8	1758789	1791570
CLN8_chr8_1758789_1791570	0/0	t0008	6229	6	0	2	0	4	0	copy fasta	CLN8	chr8	1758789	1791570
CLN8_chr8_1758789_1791570	0/0	t0009	6229	6	0	1	3	0	2	copy fasta	CLN8	chr8	1758789	1791570
CLN8_chr8_1758789_1791570	0/0	t0010	6231	5	0	2	2	1	0	copy fasta	CLN8	chr8	1758789	1791570
CLN8_chr8_1758789_1791570	0/0	t0011	6229	5	5	0	0	0	0	copy fasta	CLN8	chr8	1758789	1791570
CLN8_chr8_1758789_1791570	0/0	t0012	6224	4	0	0	4	0	0	copy fasta	CLN8	chr8	1758789	1791570
CLN8_chr8_1758789_1791570	0/0	t0013	6091	4	1	2	0	1	0	copy fasta	CLN8	chr8	1758789	1791570
CLN8_chr8_1758789_1791570	0/0	t0014	6410	4	4	0	0	0	0	copy fasta	CLN8	chr8	1758789	1791570
CLN8_chr8_1758789_1791570	0/0	t0015	6230	4	0	3	0	1	0	copy fasta	CLN8	chr8	1758789	1791570
CLN8_chr8_1758789_1791570	0/0	t0016	6231	4	0	0	4	0	0	copy fasta	CLN8	chr8	1758789	1791570
CLN8_chr8_1758789_1791570	0/0	t0017	6224	4	0	3	0	0	1	copy fasta	CLN8	chr8	1758789	1791570
CLN8_chr8_1758789_1791570	0/0	t0018	6225	3	0	0	2	0	1	copy fasta	CLN8	chr8	1758789	1791570
CLN8_chr8_1758789_1791570	0/0	t0019	6224	3	0	1	0	0	2	copy fasta	CLN8	chr8	1758789	1791570
CLN8_chr8_1758789_1791570	0/0	t0020	6269	3	2	1	0	0	0	copy fasta	CLN8	chr8	1758789	1791570
CLN8_chr8_1758789_1791570	0/0	t0021	6230	3	0	0	0	0	3	copy fasta	CLN8	chr8	1758789	1791570
CLN8_chr8_1758789_1791570	0/0	t0022	6222	2	0	0	2	0	0	copy fasta	CLN8	chr8	1758789	1791570
CLN8_chr8_1758789_1791570	0/0	t0023	6224	2	0	0	2	0	0	copy fasta	CLN8	chr8	1758789	1791570
CLN8_chr8_1758789_1791570	0/0	t0024	6224	2	0	2	0	0	0	copy fasta	CLN8	chr8	1758789	1791570
CLN8_chr8_1758789_1791570	0/0	t0025	6132	2	2	0	0	0	0	copy fasta	CLN8	chr8	1758789	1791570
CLN8_chr8_1758789_1791570	0/0	t0026	6269	2	2	0	0	0	0	copy fasta	CLN8	chr8	1758789	1791570
CLN8_chr8_1758789_1791570	0/0	t0027	6274	2	2	0	0	0	0	copy fasta	CLN8	chr8	1758789	1791570
CLN8_chr8_1758789_1791570	0/0	t0028	6228	2	1	0	1	0	0	copy fasta	CLN8	chr8	1758789	1791570
CLN8_chr8_1758789_1791570	0/0	t0029	6227	2	1	1	0	0	0	copy fasta	CLN8	chr8	1758789	1791570
CLN8_chr8_1758789_1791570	0/0	t0030	6229	2	2	0	0	0	0	copy fasta	CLN8	chr8	1758789	1791570
CLN8_chr8_1758789_1791570	0/0	t0031	6229	2	0	0	0	0	2	copy fasta	CLN8	chr8	1758789	1791570
CLN8_chr8_1758789_1791570	0/0	t0032	6229	2	2	0	0	0	0	copy fasta	CLN8	chr8	1758789	1791570
CLN8_chr8_1758789_1791570	0/0	t0033	6229	2	0	2	0	0	0	copy fasta	CLN8	chr8	1758789	1791570
CLN8_chr8_1758789_1791570	0/0	t0034	6229	2	1	1	0	0	0	copy fasta	CLN8	chr8	1758789	1791570
CLN8_chr8_1758789_1791570	0/0	t0035	6091	2	0	1	0	1	0	copy fasta	CLN8	chr8	1758789	1791570
CLN8_chr8_1758789_1791570	0/0	t0036	6224	2	0	0	0	0	2	copy fasta	CLN8	chr8	1758789	1791570
CLN8_chr8_1758789_1791570	0/0	t0037	6224	2	0	0	2	0	0	copy fasta	CLN8	chr8	1758789	1791570
CLN8_chr8_1758789_1791570	0/0	t0038	6226	2	0	0	1	0	1	copy fasta	CLN8	chr8	1758789	1791570
CLN8_chr8_1758789_1791570	0/0	t0039	6229	1	0	0	1	0	0	copy fasta	CLN8	chr8	1758789	1791570
CLN8_chr8_1758789_1791570	0/0	t0040	6224	1	0	0	1	0	0	copy fasta	CLN8	chr8	1758789	1791570
CLN8_chr8_1758789_1791570	0/0	t0041	6223	1	0	1	0	0	0	copy fasta	CLN8	chr8	1758789	1791570
CLN8_chr8_1758789_1791570	0/0	t0042	6225	1	0	0	1	0	0	copy fasta	CLN8	chr8	1758789	1791570
CLN8_chr8_1758789_1791570	0/0	t0043	6224	1	0	1	0	0	0	copy fasta	CLN8	chr8	1758789	1791570
CLN8_chr8_1758789_1791570	0/0	t0044	6223	1	0	0	1	0	0	copy fasta	CLN8	chr8	1758789	1791570
CLN8_chr8_1758789_1791570	0/0	t0045	6179	1	0	1	0	0	0	copy fasta	CLN8	chr8	1758789	1791570
CLN8_chr8_1758789_1791570	0/0	t0046	6224	1	0	0	1	0	0	copy fasta	CLN8	chr8	1758789	1791570
CLN8_chr8_1758789_1791570	0/0	t0047	6224	1	0	0	1	0	0	copy fasta	CLN8	chr8	1758789	1791570
CLN8_chr8_1758789_1791570	0/0	t0048	6224	1	0	0	1	0	0	copy fasta	CLN8	chr8	1758789	1791570
CLN8_chr8_1758789_1791570	0/0	t0049	6224	1	0	0	1	0	0	copy fasta	CLN8	chr8	1758789	1791570
CLN8_chr8_1758789_1791570	0/0	t0050	6226	1	1	0	0	0	0	copy fasta	CLN8	chr8	1758789	1791570
CLN8_chr8_1758789_1791570	0/0	t0051	6226	1	0	0	1	0	0	copy fasta	CLN8	chr8	1758789	1791570
CLN8_chr8_1758789_1791570	0/0	t0052	6226	1	0	0	1	0	0	copy fasta	CLN8	chr8	1758789	1791570
CLN8_chr8_1758789_1791570	0/0	t0053	6227	1	0	1	0	0	0	copy fasta	CLN8	chr8	1758789	1791570
CLN8_chr8_1758789_1791570	0/0	t0054	6226	1	0	1	0	0	0	copy fasta	CLN8	chr8	1758789	1791570
CLN8_chr8_1758789_1791570	0/0	t0055	6227	1	1	0	0	0	0	copy fasta	CLN8	chr8	1758789	1791570
CLN8_chr8_1758789_1791570	0/1	t0056	6089	1	0	0	0	0	0	copy fasta	CLN8	chr8	1758789	1791570