JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CLN8_chr8_1758789_1791570	0/0	t0107	6229	1	0	0	1	0	0	copy fasta	CLN8	chr8	1758789	1791570
CLN8_chr8_1758789_1791570	0/0	t0108	6225	1	0	0	1	0	0	copy fasta	CLN8	chr8	1758789	1791570
CLN8_chr8_1758789_1791570	0/0	t0109	6225	1	0	0	0	0	1	copy fasta	CLN8	chr8	1758789	1791570
CLN8_chr8_1758789_1791570	0/0	t0110	6225	1	0	0	1	0	0	copy fasta	CLN8	chr8	1758789	1791570
CLN8_chr8_1758789_1791570	0/0	t0111	6225	1	0	0	1	0	0	copy fasta	CLN8	chr8	1758789	1791570
CLN8_chr8_1758789_1791570	0/0	t0112	6224	1	0	0	0	0	1	copy fasta	CLN8	chr8	1758789	1791570
CLN8_chr8_1758789_1791570	0/0	t0113	6224	1	0	0	1	0	0	copy fasta	CLN8	chr8	1758789	1791570
CLN8_chr8_1758789_1791570	0/0	t0114	6225	1	0	0	1	0	0	copy fasta	CLN8	chr8	1758789	1791570
CLN8_chr8_1758789_1791570	0/0	t0115	6224	1	0	0	1	0	0	copy fasta	CLN8	chr8	1758789	1791570
CLN8_chr8_1758789_1791570	0/0	t0116	6224	1	0	0	1	0	0	copy fasta	CLN8	chr8	1758789	1791570
CLN8_chr8_1758789_1791570	0/0	t0117	6226	1	0	0	1	0	0	copy fasta	CLN8	chr8	1758789	1791570
CLN8_chr8_1758789_1791570	0/0	t0118	6224	1	0	0	1	0	0	copy fasta	CLN8	chr8	1758789	1791570
CLNK_chr4_10481395_10689768	0/0	t0001	4221	32	18	2	11	0	1	copy fasta	CLNK	chr4	10481395	10689768
CLNK_chr4_10481395_10689768	0/0	t0002	4230	31	11	5	14	0	1	copy fasta	CLNK	chr4	10481395	10689768
CLNK_chr4_10481395_10689768	0/0	t0003	4224	28	1	9	11	3	4	copy fasta	CLNK	chr4	10481395	10689768
CLNK_chr4_10481395_10689768	0/0	t0004	4224	26	7	5	11	1	2	copy fasta	CLNK	chr4	10481395	10689768
CLNK_chr4_10481395_10689768	0/0	t0005	4221	19	2	0	13	0	4	copy fasta	CLNK	chr4	10481395	10689768
CLNK_chr4_10481395_10689768	0/0	t0006	4230	19	0	5	11	1	2	copy fasta	CLNK	chr4	10481395	10689768
CLNK_chr4_10481395_10689768	0/0	t0007	4219	14	4	8	1	1	0	copy fasta	CLNK	chr4	10481395	10689768
CLNK_chr4_10481395_10689768	0/0	t0008	4230	13	1	3	7	0	2	copy fasta	CLNK	chr4	10481395	10689768
CLNK_chr4_10481395_10689768	0/0	t0009	4219	12	0	1	7	3	1	copy fasta	CLNK	chr4	10481395	10689768
CLNK_chr4_10481395_10689768	0/0	t0010	4230	7	4	0	2	1	0	copy fasta	CLNK	chr4	10481395	10689768
CLNK_chr4_10481395_10689768	0/0	t0011	4231	7	0	0	7	0	0	copy fasta	CLNK	chr4	10481395	10689768
CLNK_chr4_10481395_10689768	0/0	t0012	4219	6	0	0	6	0	0	copy fasta	CLNK	chr4	10481395	10689768
CLNK_chr4_10481395_10689768	0/0	t0013	4219	5	0	0	5	0	0	copy fasta	CLNK	chr4	10481395	10689768
CLNK_chr4_10481395_10689768	0/0	t0014	4225	5	1	0	4	0	0	copy fasta	CLNK	chr4	10481395	10689768
CLNK_chr4_10481395_10689768	0/0	t0015	4219	5	4	0	0	0	1	copy fasta	CLNK	chr4	10481395	10689768
CLNK_chr4_10481395_10689768	0/0	t0016	4230	4	4	0	0	0	0	copy fasta	CLNK	chr4	10481395	10689768
CLNK_chr4_10481395_10689768	0/0	t0017	4223	3	0	0	0	2	1	copy fasta	CLNK	chr4	10481395	10689768
CLNK_chr4_10481395_10689768	0/0	t0018	4224	3	0	3	0	0	0	copy fasta	CLNK	chr4	10481395	10689768
CLNK_chr4_10481395_10689768	0/0	t0019	4224	3	3	0	0	0	0	copy fasta	CLNK	chr4	10481395	10689768
CLNK_chr4_10481395_10689768	0/0	t0020	4230	3	0	3	0	0	0	copy fasta	CLNK	chr4	10481395	10689768
CLNK_chr4_10481395_10689768	1/0	t0021	4216	3	2	0	0	0	0	copy fasta	CLNK	chr4	10481395	10689768
CLNK_chr4_10481395_10689768	0/0	t0022	4221	3	3	0	0	0	0	copy fasta	CLNK	chr4	10481395	10689768
CLNK_chr4_10481395_10689768	0/0	t0023	4230	2	2	0	0	0	0	copy fasta	CLNK	chr4	10481395	10689768
CLNK_chr4_10481395_10689768	0/0	t0024	4225	2	0	0	2	0	0	copy fasta	CLNK	chr4	10481395	10689768
CLNK_chr4_10481395_10689768	0/0	t0025	4219	2	0	0	2	0	0	copy fasta	CLNK	chr4	10481395	10689768
CLNK_chr4_10481395_10689768	0/0	t0026	4231	2	0	0	1	0	1	copy fasta	CLNK	chr4	10481395	10689768
CLNK_chr4_10481395_10689768	0/0	t0027	4230	2	0	0	2	0	0	copy fasta	CLNK	chr4	10481395	10689768
CLNK_chr4_10481395_10689768	0/0	t0028	4229	2	1	0	1	0	0	copy fasta	CLNK	chr4	10481395	10689768
CLNK_chr4_10481395_10689768	0/0	t0029	4221	2	0	0	2	0	0	copy fasta	CLNK	chr4	10481395	10689768
CLNK_chr4_10481395_10689768	0/0	t0030	4231	2	0	0	0	0	2	copy fasta	CLNK	chr4	10481395	10689768
CLNK_chr4_10481395_10689768	0/0	t0031	4230	2	2	0	0	0	0	copy fasta	CLNK	chr4	10481395	10689768
CLNK_chr4_10481395_10689768	0/0	t0032	4223	2	2	0	0	0	0	copy fasta	CLNK	chr4	10481395	10689768
CLNK_chr4_10481395_10689768	0/0	t0033	4221	2	2	0	0	0	0	copy fasta	CLNK	chr4	10481395	10689768
CLNK_chr4_10481395_10689768	0/0	t0034	4230	1	1	0	0	0	0	copy fasta	CLNK	chr4	10481395	10689768
CLNK_chr4_10481395_10689768	0/0	t0035	4221	1	1	0	0	0	0	copy fasta	CLNK	chr4	10481395	10689768
CLNK_chr4_10481395_10689768	0/0	t0036	4228	1	1	0	0	0	0	copy fasta	CLNK	chr4	10481395	10689768
CLNK_chr4_10481395_10689768	0/1	t0037	4219	1	0	0	0	0	0	copy fasta	CLNK	chr4	10481395	10689768
CLNK_chr4_10481395_10689768	0/0	t0038	4210	1	0	0	0	1	0	copy fasta	CLNK	chr4	10481395	10689768