JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
COL27A1_chr9_114150537_114317511	0/0	t0015	2231	2	2	0	0	0	0	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	t0016	2232	2	0	0	0	2	0	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	t0017	2235	2	2	0	0	0	0	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	t0018	2231	2	0	0	1	0	1	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	t0019	2235	1	1	0	0	0	0	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	t0020	2234	1	0	1	0	0	0	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	t0021	2231	1	1	0	0	0	0	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	t0022	2231	1	1	0	0	0	0	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	t0023	2232	1	0	0	0	1	0	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	t0024	2232	1	0	0	1	0	0	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	t0025	2230	1	0	0	0	0	1	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	t0026	2234	1	1	0	0	0	0	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	t0027	2232	1	0	1	0	0	0	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	t0028	2231	1	0	1	0	0	0	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	t0029	2231	1	1	0	0	0	0	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	t0030	2236	1	1	0	0	0	0	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	t0031	2235	1	1	0	0	0	0	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	t0032	2234	1	1	0	0	0	0	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	t0033	2233	1	0	0	1	0	0	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	t0034	2235	1	0	0	1	0	0	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	t0035	2234	1	0	1	0	0	0	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	t0036	2232	1	0	0	0	0	1	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	t0037	2234	1	1	0	0	0	0	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	t0038	2234	1	0	0	1	0	0	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	t0039	2234	1	0	0	1	0	0	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	t0040	2235	1	1	0	0	0	0	copy fasta	COL27A1	chr9	114150537	114317511
COL28A1_chr7_7352875_7540873	0/0	t0001	920	79	13	17	27	7	15	copy fasta	COL28A1	chr7	7352875	7540873
COL28A1_chr7_7352875_7540873	0/1	t0002	920	60	27	12	11	5	4	copy fasta	COL28A1	chr7	7352875	7540873
COL28A1_chr7_7352875_7540873	0/0	t0003	920	41	38	2	0	1	0	copy fasta	COL28A1	chr7	7352875	7540873
COL28A1_chr7_7352875_7540873	0/0	t0004	920	4	0	4	0	0	0	copy fasta	COL28A1	chr7	7352875	7540873
COL28A1_chr7_7352875_7540873	1/0	t0005	920	3	0	1	0	0	1	copy fasta	COL28A1	chr7	7352875	7540873
COL28A1_chr7_7352875_7540873	0/0	t0006	920	2	2	0	0	0	0	copy fasta	COL28A1	chr7	7352875	7540873
COL28A1_chr7_7352875_7540873	0/0	t0007	920	2	2	0	0	0	0	copy fasta	COL28A1	chr7	7352875	7540873
COL28A1_chr7_7352875_7540873	0/0	t0008	920	2	2	0	0	0	0	copy fasta	COL28A1	chr7	7352875	7540873
COL28A1_chr7_7352875_7540873	0/0	t0009	920	2	0	1	0	1	0	copy fasta	COL28A1	chr7	7352875	7540873
COL28A1_chr7_7352875_7540873	0/0	t0010	920	1	0	1	0	0	0	copy fasta	COL28A1	chr7	7352875	7540873
COL2A1_chr12_47967967_48009476	0/1	t0001	596	273	55	49	120	11	37	copy fasta	COL2A1	chr12	47967967	48009476
COL2A1_chr12_47967967_48009476	1/0	t0002	596	113	26	25	54	1	6	copy fasta	COL2A1	chr12	47967967	48009476
COL2A1_chr12_47967967_48009476	0/0	t0003	596	8	8	0	0	0	0	copy fasta	COL2A1	chr12	47967967	48009476
COL2A1_chr12_47967967_48009476	0/0	t0004	596	4	2	0	0	1	1	copy fasta	COL2A1	chr12	47967967	48009476
COL2A1_chr12_47967967_48009476	0/0	t0005	596	3	0	0	3	0	0	copy fasta	COL2A1	chr12	47967967	48009476
COL2A1_chr12_47967967_48009476	0/0	t0006	596	3	0	0	3	0	0	copy fasta	COL2A1	chr12	47967967	48009476
COL2A1_chr12_47967967_48009476	0/0	t0007	596	3	3	0	0	0	0	copy fasta	COL2A1	chr12	47967967	48009476
COL2A1_chr12_47967967_48009476	0/0	t0008	596	2	0	0	2	0	0	copy fasta	COL2A1	chr12	47967967	48009476
COL2A1_chr12_47967967_48009476	0/0	t0009	596	2	2	0	0	0	0	copy fasta	COL2A1	chr12	47967967	48009476
COL2A1_chr12_47967967_48009476	0/0	t0010	596	1	0	0	1	0	0	copy fasta	COL2A1	chr12	47967967	48009476
COL2A1_chr12_47967967_48009476	0/0	t0011	596	1	0	0	0	1	0	copy fasta	COL2A1	chr12	47967967	48009476
COL2A1_chr12_47967967_48009476	0/0	t0012	596	1	0	0	1	0	0	copy fasta	COL2A1	chr12	47967967	48009476
COL3A1_chr2_188969373_189017746	1/1	t0001	1090	286	47	54	144	8	31	copy fasta	COL3A1	chr2	188969373	189017746
COL3A1_chr2_188969373_189017746	0/0	t0002	1088	60	16	10	20	5	9	copy fasta	COL3A1	chr2	188969373	189017746