Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ABCA4_chr1_93987834_94126148	1/1	t0001	507	270	68	56	101	13	30	copy fasta	ABCA4	chr1	93987834	94126148
ABCA4_chr1_93987834_94126148	0/0	t0002	507	27	13	2	9	1	2	copy fasta	ABCA4	chr1	93987834	94126148
ABCA4_chr1_93987834_94126148	0/0	t0003	507	5	5	0	0	0	0	copy fasta	ABCA4	chr1	93987834	94126148
ABCA4_chr1_93987834_94126148	0/0	t0004	507	3	3	0	0	0	0	copy fasta	ABCA4	chr1	93987834	94126148
ABCA4_chr1_93987834_94126148	0/0	t0005	507	1	1	0	0	0	0	copy fasta	ABCA4	chr1	93987834	94126148
ABCA5_chr17_69239311_69332133	0/0	t0001	3323	106	14	19	52	6	15	copy fasta	ABCA5	chr17	69239311	69332133
ABCA5_chr17_69239311_69332133	1/0	t0002	3324	94	8	19	54	2	10	copy fasta	ABCA5	chr17	69239311	69332133
ABCA5_chr17_69239311_69332133	0/0	t0003	3324	61	28	19	9	2	3	copy fasta	ABCA5	chr17	69239311	69332133
ABCA5_chr17_69239311_69332133	0/1	t0004	3324	27	11	5	4	2	4	copy fasta	ABCA5	chr17	69239311	69332133
ABCA5_chr17_69239311_69332133	0/0	t0005	3324	8	2	4	0	1	1	copy fasta	ABCA5	chr17	69239311	69332133
ABCA5_chr17_69239311_69332133	0/0	t0006	3324	8	5	3	0	0	0	copy fasta	ABCA5	chr17	69239311	69332133
ABCA5_chr17_69239311_69332133	0/0	t0007	3325	4	0	0	4	0	0	copy fasta	ABCA5	chr17	69239311	69332133
ABCA5_chr17_69239311_69332133	0/0	t0008	3324	4	4	0	0	0	0	copy fasta	ABCA5	chr17	69239311	69332133
ABCA5_chr17_69239311_69332133	0/0	t0009	3324	4	0	0	4	0	0	copy fasta	ABCA5	chr17	69239311	69332133
ABCA5_chr17_69239311_69332133	0/0	t0010	3323	4	4	0	0	0	0	copy fasta	ABCA5	chr17	69239311	69332133
ABCA5_chr17_69239311_69332133	0/0	t0011	3324	3	0	0	3	0	0	copy fasta	ABCA5	chr17	69239311	69332133
ABCA5_chr17_69239311_69332133	0/0	t0012	3324	3	3	0	0	0	0	copy fasta	ABCA5	chr17	69239311	69332133
ABCA5_chr17_69239311_69332133	0/0	t0013	3323	2	0	0	2	0	0	copy fasta	ABCA5	chr17	69239311	69332133
ABCA5_chr17_69239311_69332133	0/0	t0014	3324	2	2	0	0	0	0	copy fasta	ABCA5	chr17	69239311	69332133
ABCA5_chr17_69239311_69332133	0/0	t0015	3324	2	2	0	0	0	0	copy fasta	ABCA5	chr17	69239311	69332133
ABCA5_chr17_69239311_69332133	0/0	t0016	3324	2	2	0	0	0	0	copy fasta	ABCA5	chr17	69239311	69332133
ABCA5_chr17_69239311_69332133	0/0	t0017	3324	1	1	0	0	0	0	copy fasta	ABCA5	chr17	69239311	69332133
ABCA5_chr17_69239311_69332133	0/0	t0018	3323	1	0	0	1	0	0	copy fasta	ABCA5	chr17	69239311	69332133
ABCA5_chr17_69239311_69332133	0/0	t0019	3323	1	0	0	0	0	1	copy fasta	ABCA5	chr17	69239311	69332133
ABCA5_chr17_69239311_69332133	0/0	t0020	3323	1	0	0	0	0	1	copy fasta	ABCA5	chr17	69239311	69332133
ABCA5_chr17_69239311_69332133	0/0	t0021	3324	1	1	0	0	0	0	copy fasta	ABCA5	chr17	69239311	69332133
ABCA5_chr17_69239311_69332133	0/0	t0022	3324	1	0	0	0	0	1	copy fasta	ABCA5	chr17	69239311	69332133
ABCA5_chr17_69239311_69332133	0/0	t0023	3324	1	0	0	1	0	0	copy fasta	ABCA5	chr17	69239311	69332133
ABCA5_chr17_69239311_69332133	0/0	t0024	3324	1	0	0	1	0	0	copy fasta	ABCA5	chr17	69239311	69332133
ABCA5_chr17_69239311_69332133	0/0	t0025	3324	1	0	0	1	0	0	copy fasta	ABCA5	chr17	69239311	69332133
ABCA5_chr17_69239311_69332133	0/0	t0026	3324	1	1	0	0	0	0	copy fasta	ABCA5	chr17	69239311	69332133
ABCA5_chr17_69239311_69332133	0/0	t0027	3324	1	1	0	0	0	0	copy fasta	ABCA5	chr17	69239311	69332133
ABCA5_chr17_69239311_69332133	0/0	t0028	3324	1	1	0	0	0	0	copy fasta	ABCA5	chr17	69239311	69332133
ABCA5_chr17_69239311_69332133	0/0	t0029	3324	1	1	0	0	0	0	copy fasta	ABCA5	chr17	69239311	69332133
ABCA5_chr17_69239311_69332133	0/0	t0030	3324	1	1	0	0	0	0	copy fasta	ABCA5	chr17	69239311	69332133
ABCA5_chr17_69239311_69332133	0/0	t0031	3324	1	0	1	0	0	0	copy fasta	ABCA5	chr17	69239311	69332133
ABCA5_chr17_69239311_69332133	0/0	t0032	3324	1	0	0	0	1	0	copy fasta	ABCA5	chr17	69239311	69332133
ABCA6_chr17_69073702_69146895	0/1	t0001	468	177	69	32	44	12	19	copy fasta	ABCA6	chr17	69073702	69146895
ABCA6_chr17_69073702_69146895	1/0	t0002	468	148	17	26	83	4	17	copy fasta	ABCA6	chr17	69073702	69146895
ABCA6_chr17_69073702_69146895	0/0	t0003	468	1	0	0	1	0	0	copy fasta	ABCA6	chr17	69073702	69146895
ABCA7_chr19_1035107_1070572	0/1	t0001	375	14	4	1	3	2	3	copy fasta	ABCA7	chr19	1035107	1070572
ABCA7_chr19_1035107_1070572	1/0	t0002	375	11	4	0	5	0	1	copy fasta	ABCA7	chr19	1035107	1070572
ABCA7_chr19_1035107_1070572	0/0	t0003	375	5	0	1	4	0	0	copy fasta	ABCA7	chr19	1035107	1070572
ABCA8_chr17_68862289_68960392	1/1	t0001	1137	260	74	33	112	14	25	copy fasta	ABCA8	chr17	68862289	68960392
ABCA8_chr17_68862289_68960392	0/0	t0002	1137	6	0	1	5	0	0	copy fasta	ABCA8	chr17	68862289	68960392
ABCA8_chr17_68862289_68960392	0/0	t0003	1137	2	0	0	2	0	0	copy fasta	ABCA8	chr17	68862289	68960392
ABCA8_chr17_68862289_68960392	0/0	t0004	1137	2	2	0	0	0	0	copy fasta	ABCA8	chr17	68862289	68960392
ABCA8_chr17_68862289_68960392	0/0	t0005	1137	2	2	0	0	0	0	copy fasta	ABCA8	chr17	68862289	68960392
ABCA8_chr17_68862289_68960392	0/0	t0006	1137	1	0	0	0	0	1	copy fasta	ABCA8	chr17	68862289	68960392
ABCA8_chr17_68862289_68960392	0/0	t0007	1137	1	0	0	1	0	0	copy fasta	ABCA8	chr17	68862289	68960392