JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CSAD_chr12_53152663_53185925	0/0	t0004	1133	6	0	0	6	0	0	copy fasta	CSAD	chr12	53152663	53185925
CSAD_chr12_53152663_53185925	0/0	t0005	1133	6	5	1	0	0	0	copy fasta	CSAD	chr12	53152663	53185925
CSAD_chr12_53152663_53185925	0/0	t0006	1133	5	0	0	5	0	0	copy fasta	CSAD	chr12	53152663	53185925
CSAD_chr12_53152663_53185925	0/0	t0007	1133	2	2	0	0	0	0	copy fasta	CSAD	chr12	53152663	53185925
CSAD_chr12_53152663_53185925	0/0	t0008	1133	2	2	0	0	0	0	copy fasta	CSAD	chr12	53152663	53185925
CSAD_chr12_53152663_53185925	0/0	t0009	1133	1	1	0	0	0	0	copy fasta	CSAD	chr12	53152663	53185925
CSAD_chr12_53152663_53185925	0/0	t0010	1133	1	1	0	0	0	0	copy fasta	CSAD	chr12	53152663	53185925
CSAD_chr12_53152663_53185925	0/0	t0011	1133	1	0	0	0	1	0	copy fasta	CSAD	chr12	53152663	53185925
CSAD_chr12_53152663_53185925	0/0	t0012	1133	1	0	0	1	0	0	copy fasta	CSAD	chr12	53152663	53185925
CSAD_chr12_53152663_53185925	0/0	t0013	1133	1	0	0	1	0	0	copy fasta	CSAD	chr12	53152663	53185925
CSAD_chr12_53152663_53185925	0/0	t0014	1133	1	0	0	1	0	0	copy fasta	CSAD	chr12	53152663	53185925
CSAD_chr12_53152663_53185925	0/0	t0015	1133	1	0	0	1	0	0	copy fasta	CSAD	chr12	53152663	53185925
CSAG1_chrX_152722484_152738721	1/1	t0001	409	148	53	39	41	6	7	copy fasta	CSAG1	chrX	152722484	152738721
CSAG1_chrX_152722484_152738721	0/0	t0002	409	145	20	13	88	2	22	copy fasta	CSAG1	chrX	152722484	152738721
CSAG1_chrX_152722484_152738721	0/0	t0003	409	21	4	7	9	1	0	copy fasta	CSAG1	chrX	152722484	152738721
CSAG1_chrX_152722484_152738721	0/0	t0004	409	1	1	0	0	0	0	copy fasta	CSAG1	chrX	152722484	152738721
CSAG1_chrX_152722484_152738721	0/0	t0005	409	1	0	1	0	0	0	copy fasta	CSAG1	chrX	152722484	152738721
CSAG1_chrX_152722484_152738721	0/0	t0006	409	1	1	0	0	0	0	copy fasta	CSAG1	chrX	152722484	152738721
CSAG1_chrX_152722484_152738721	0/0	t0007	409	1	1	0	0	0	0	copy fasta	CSAG1	chrX	152722484	152738721
CSAG2_chrX_152703261_152714273	0/0	t0000	0	1	0	0	1	0	0	copy fasta	CSAG2	chrX	152703261	152714273
CSAG2_chrX_152703261_152714273	0/0	t0001	472	177	45	34	74	10	14	copy fasta	CSAG2	chrX	152703261	152714273
CSAG2_chrX_152703261_152714273	0/0	t0002	472	13	1	5	6	1	0	copy fasta	CSAG2	chrX	152703261	152714273
CSAG2_chrX_152703261_152714273	0/0	t0003	472	5	5	0	0	0	0	copy fasta	CSAG2	chrX	152703261	152714273
CSAG2_chrX_152703261_152714273	0/0	t0004	472	4	0	0	4	0	0	copy fasta	CSAG2	chrX	152703261	152714273
CSAG2_chrX_152703261_152714273	0/0	t0005	472	3	3	0	0	0	0	copy fasta	CSAG2	chrX	152703261	152714273
CSAG2_chrX_152703261_152714273	0/0	t0006	472	2	0	0	1	0	1	copy fasta	CSAG2	chrX	152703261	152714273
CSAG2_chrX_152703261_152714273	0/0	t0007	472	1	0	0	1	0	0	copy fasta	CSAG2	chrX	152703261	152714273
CSAG2_chrX_152703261_152714273	0/0	t0008	471	1	0	0	1	0	0	copy fasta	CSAG2	chrX	152703261	152714273
CSAG2_chrX_152703261_152714273	0/0	t0009	471	1	0	0	1	0	0	copy fasta	CSAG2	chrX	152703261	152714273
CSAG2_chrX_152703261_152714273	0/0	t0010	472	1	1	0	0	0	0	copy fasta	CSAG2	chrX	152703261	152714273
CSAG2_chrX_152703261_152714273	0/0	t0011	470	1	0	1	0	0	0	copy fasta	CSAG2	chrX	152703261	152714273
CSAG2_chrX_152703261_152714273	0/0	t0012	472	1	1	0	0	0	0	copy fasta	CSAG2	chrX	152703261	152714273
CSDC2_chr22_41556010_41581666	1/0	t0001	2069	58	11	11	18	6	11	copy fasta	CSDC2	chr22	41556010	41581666
CSDC2_chr22_41556010_41581666	0/1	t0002	2062	42	9	10	11	4	7	copy fasta	CSDC2	chr22	41556010	41581666
CSDC2_chr22_41556010_41581666	0/0	t0003	2079	29	1	21	3	0	4	copy fasta	CSDC2	chr22	41556010	41581666
CSDC2_chr22_41556010_41581666	0/0	t0004	2068	19	1	0	17	0	1	copy fasta	CSDC2	chr22	41556010	41581666
CSDC2_chr22_41556010_41581666	0/0	t0005	2075	11	7	3	0	0	1	copy fasta	CSDC2	chr22	41556010	41581666
CSDC2_chr22_41556010_41581666	0/0	t0006	2077	10	0	1	3	0	6	copy fasta	CSDC2	chr22	41556010	41581666
CSDC2_chr22_41556010_41581666	0/0	t0007	2069	9	2	4	3	0	0	copy fasta	CSDC2	chr22	41556010	41581666
CSDC2_chr22_41556010_41581666	0/0	t0008	2070	9	7	1	1	0	0	copy fasta	CSDC2	chr22	41556010	41581666
CSDC2_chr22_41556010_41581666	0/0	t0009	2079	9	8	1	0	0	0	copy fasta	CSDC2	chr22	41556010	41581666
CSDC2_chr22_41556010_41581666	0/0	t0010	2077	7	0	0	7	0	0	copy fasta	CSDC2	chr22	41556010	41581666
CSDC2_chr22_41556010_41581666	0/0	t0011	2071	6	6	0	0	0	0	copy fasta	CSDC2	chr22	41556010	41581666
CSDC2_chr22_41556010_41581666	0/0	t0012	2066	5	2	1	2	0	0	copy fasta	CSDC2	chr22	41556010	41581666
CSDC2_chr22_41556010_41581666	0/0	t0013	2068	5	0	0	5	0	0	copy fasta	CSDC2	chr22	41556010	41581666
CSDC2_chr22_41556010_41581666	0/0	t0014	2071	5	5	0	0	0	0	copy fasta	CSDC2	chr22	41556010	41581666
CSDC2_chr22_41556010_41581666	0/0	t0015	2071	4	2	0	2	0	0	copy fasta	CSDC2	chr22	41556010	41581666
CSDC2_chr22_41556010_41581666	0/0	t0016	2081	4	0	1	1	0	2	copy fasta	CSDC2	chr22	41556010	41581666
CSDC2_chr22_41556010_41581666	0/0	t0017	2075	4	1	2	0	1	0	copy fasta	CSDC2	chr22	41556010	41581666
CSDC2_chr22_41556010_41581666	0/0	t0018	2061	4	4	0	0	0	0	copy fasta	CSDC2	chr22	41556010	41581666