JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CTR9_chr11_10746246_10784746	0/0	t0007	809	1	0	0	1	0	0	copy fasta	CTR9	chr11	10746246	10784746
CTR9_chr11_10746246_10784746	0/0	t0008	809	1	0	1	0	0	0	copy fasta	CTR9	chr11	10746246	10784746
CTRB1_chr16_75213988_75229924	1/1	t0001	79	2	0	0	0	0	0	copy fasta	CTRB1	chr16	75213988	75229924
CTRB2_chr16_75199103_75212161	1/1	t0001	79	6	0	4	0	0	0	copy fasta	CTRB2	chr16	75199103	75212161
CTRC_chr1_15433443_15454242	1/0	t0001	2676	170	15	26	103	6	19	copy fasta	CTRC	chr1	15433443	15454242
CTRC_chr1_15433443_15454242	0/1	t0002	2677	90	28	13	28	3	17	copy fasta	CTRC	chr1	15433443	15454242
CTRC_chr1_15433443_15454242	0/0	t0003	2669	64	7	21	29	3	4	copy fasta	CTRC	chr1	15433443	15454242
CTRC_chr1_15433443_15454242	0/0	t0004	2676	17	10	4	1	0	2	copy fasta	CTRC	chr1	15433443	15454242
CTRC_chr1_15433443_15454242	0/0	t0005	2676	12	0	0	12	0	0	copy fasta	CTRC	chr1	15433443	15454242
CTRC_chr1_15433443_15454242	0/0	t0006	2677	7	0	4	3	0	0	copy fasta	CTRC	chr1	15433443	15454242
CTRC_chr1_15433443_15454242	0/0	t0007	2678	5	5	0	0	0	0	copy fasta	CTRC	chr1	15433443	15454242
CTRC_chr1_15433443_15454242	0/0	t0008	2674	5	5	0	0	0	0	copy fasta	CTRC	chr1	15433443	15454242
CTRC_chr1_15433443_15454242	0/0	t0009	2677	5	0	0	5	0	0	copy fasta	CTRC	chr1	15433443	15454242
CTRC_chr1_15433443_15454242	0/0	t0010	2677	4	4	0	0	0	0	copy fasta	CTRC	chr1	15433443	15454242
CTRC_chr1_15433443_15454242	0/0	t0011	2677	4	1	2	0	0	1	copy fasta	CTRC	chr1	15433443	15454242
CTRC_chr1_15433443_15454242	0/0	t0012	2676	4	4	0	0	0	0	copy fasta	CTRC	chr1	15433443	15454242
CTRC_chr1_15433443_15454242	0/0	t0013	2676	4	0	0	4	0	0	copy fasta	CTRC	chr1	15433443	15454242
CTRC_chr1_15433443_15454242	0/0	t0014	2670	3	3	0	0	0	0	copy fasta	CTRC	chr1	15433443	15454242
CTRC_chr1_15433443_15454242	0/0	t0015	2676	3	1	2	0	0	0	copy fasta	CTRC	chr1	15433443	15454242
CTRC_chr1_15433443_15454242	0/0	t0016	2677	3	0	3	0	0	0	copy fasta	CTRC	chr1	15433443	15454242
CTRC_chr1_15433443_15454242	0/0	t0017	2678	2	2	0	0	0	0	copy fasta	CTRC	chr1	15433443	15454242
CTRC_chr1_15433443_15454242	0/0	t0018	2675	2	0	0	1	0	1	copy fasta	CTRC	chr1	15433443	15454242
CTRC_chr1_15433443_15454242	0/0	t0019	2678	2	1	0	1	0	0	copy fasta	CTRC	chr1	15433443	15454242
CTRC_chr1_15433443_15454242	0/0	t0020	2675	2	0	0	1	1	0	copy fasta	CTRC	chr1	15433443	15454242
CTRC_chr1_15433443_15454242	0/0	t0021	2675	1	1	0	0	0	0	copy fasta	CTRC	chr1	15433443	15454242
CTRC_chr1_15433443_15454242	0/0	t0022	2677	1	1	0	0	0	0	copy fasta	CTRC	chr1	15433443	15454242
CTRC_chr1_15433443_15454242	0/0	t0023	2664	1	0	1	0	0	0	copy fasta	CTRC	chr1	15433443	15454242
CTRC_chr1_15433443_15454242	0/0	t0024	2678	1	1	0	0	0	0	copy fasta	CTRC	chr1	15433443	15454242
CTRC_chr1_15433443_15454242	0/0	t0025	2669	1	0	0	1	0	0	copy fasta	CTRC	chr1	15433443	15454242
CTRC_chr1_15433443_15454242	0/0	t0026	2677	1	1	0	0	0	0	copy fasta	CTRC	chr1	15433443	15454242
CTRC_chr1_15433443_15454242	0/0	t0027	2675	1	0	0	0	1	0	copy fasta	CTRC	chr1	15433443	15454242
CTRC_chr1_15433443_15454242	0/0	t0028	2676	1	0	0	0	1	0	copy fasta	CTRC	chr1	15433443	15454242
CTRC_chr1_15433443_15454242	0/0	t0029	2676	1	1	0	0	0	0	copy fasta	CTRC	chr1	15433443	15454242
CTRC_chr1_15433443_15454242	0/0	t0030	2675	1	0	1	0	0	0	copy fasta	CTRC	chr1	15433443	15454242
CTRC_chr1_15433443_15454242	0/0	t0031	2676	1	0	0	0	1	0	copy fasta	CTRC	chr1	15433443	15454242
CTRC_chr1_15433443_15454242	0/0	t0032	2677	1	1	0	0	0	0	copy fasta	CTRC	chr1	15433443	15454242
CTRC_chr1_15433443_15454242	0/0	t0033	2668	1	0	1	0	0	0	copy fasta	CTRC	chr1	15433443	15454242
CTRC_chr1_15433443_15454242	0/0	t0034	2677	1	0	0	1	0	0	copy fasta	CTRC	chr1	15433443	15454242
CTRC_chr1_15433443_15454242	0/0	t0035	2678	1	0	0	1	0	0	copy fasta	CTRC	chr1	15433443	15454242
CTRC_chr1_15433443_15454242	0/0	t0036	2678	1	0	0	1	0	0	copy fasta	CTRC	chr1	15433443	15454242
CTRC_chr1_15433443_15454242	0/0	t0037	2678	1	0	0	1	0	0	copy fasta	CTRC	chr1	15433443	15454242
CTRC_chr1_15433443_15454242	0/0	t0038	2669	1	0	0	0	0	1	copy fasta	CTRC	chr1	15433443	15454242
CTRC_chr1_15433443_15454242	0/0	t0039	2676	1	0	0	0	0	1	copy fasta	CTRC	chr1	15433443	15454242
CTRC_chr1_15433443_15454242	0/0	t0040	2676	1	0	0	1	0	0	copy fasta	CTRC	chr1	15433443	15454242
CTRL_chr16_67924574_67936862	1/1	t0001	371	309	97	66	111	4	29	copy fasta	CTRL	chr16	67924574	67936862
CTRL_chr16_67924574_67936862	0/0	t0002	371	1	0	0	0	0	1	copy fasta	CTRL	chr16	67924574	67936862
CTRL_chr16_67924574_67936862	0/0	t0003	371	1	1	0	0	0	0	copy fasta	CTRL	chr16	67924574	67936862
CTRL_chr16_67924574_67936862	0/0	t0004	371	1	0	0	1	0	0	copy fasta	CTRL	chr16	67924574	67936862
CTSA_chr20_45886335_45903820	1/1	t0001	416	429	92	72	202	15	46	copy fasta	CTSA	chr20	45886335	45903820
CTSA_chr20_45886335_45903820	0/0	t0002	416	1	0	0	0	1	0	copy fasta	CTSA	chr20	45886335	45903820