JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CTSC_chr11_88288592_88342736	0/0	t0004	479	1	1	0	0	0	0	copy fasta	CTSC	chr11	88288592	88342736
CTSC_chr11_88288592_88342736	0/0	t0005	578	1	1	0	0	0	0	copy fasta	CTSC	chr11	88288592	88342736
CTSC_chr11_88288592_88342736	0/0	t0006	479	1	0	0	1	0	0	copy fasta	CTSC	chr11	88288592	88342736
CTSC_chr11_88288592_88342736	0/0	t0007	479	1	1	0	0	0	0	copy fasta	CTSC	chr11	88288592	88342736
CTSD_chr11_1747755_1768927	1/0	t0001	817	306	73	51	133	12	36	copy fasta	CTSD	chr11	1747755	1768927
CTSD_chr11_1747755_1768927	0/1	t0002	817	45	10	12	15	1	6	copy fasta	CTSD	chr11	1747755	1768927
CTSD_chr11_1747755_1768927	0/0	t0003	817	10	2	5	1	1	1	copy fasta	CTSD	chr11	1747755	1768927
CTSD_chr11_1747755_1768927	0/0	t0004	817	5	5	0	0	0	0	copy fasta	CTSD	chr11	1747755	1768927
CTSD_chr11_1747755_1768927	0/0	t0005	815	4	0	3	0	0	1	copy fasta	CTSD	chr11	1747755	1768927
CTSD_chr11_1747755_1768927	0/0	t0006	817	4	0	0	4	0	0	copy fasta	CTSD	chr11	1747755	1768927
CTSD_chr11_1747755_1768927	0/0	t0007	817	2	0	0	2	0	0	copy fasta	CTSD	chr11	1747755	1768927
CTSD_chr11_1747755_1768927	0/0	t0008	817	1	0	0	1	0	0	copy fasta	CTSD	chr11	1747755	1768927
CTSD_chr11_1747755_1768927	0/0	t0009	817	1	1	0	0	0	0	copy fasta	CTSD	chr11	1747755	1768927
CTSD_chr11_1747755_1768927	0/0	t0010	817	1	0	0	1	0	0	copy fasta	CTSD	chr11	1747755	1768927
CTSD_chr11_1747755_1768927	0/0	t0011	817	1	1	0	0	0	0	copy fasta	CTSD	chr11	1747755	1768927
CTSD_chr11_1747755_1768927	0/0	t0012	817	1	0	1	0	0	0	copy fasta	CTSD	chr11	1747755	1768927
CTSD_chr11_1747755_1768927	0/0	t0013	817	1	0	0	1	0	0	copy fasta	CTSD	chr11	1747755	1768927
CTSD_chr11_1747755_1768927	0/0	t0014	817	1	0	0	0	0	1	copy fasta	CTSD	chr11	1747755	1768927
CTSD_chr11_1747755_1768927	0/0	t0015	817	1	0	0	1	0	0	copy fasta	CTSD	chr11	1747755	1768927
CTSD_chr11_1747755_1768927	0/0	t0016	817	1	0	0	1	0	0	copy fasta	CTSD	chr11	1747755	1768927
CTSD_chr11_1747755_1768927	0/0	t0017	817	1	0	0	0	0	1	copy fasta	CTSD	chr11	1747755	1768927
CTSE_chr1_206004264_206028895	1/1	t0001	1024	225	34	58	88	12	31	copy fasta	CTSE	chr1	206004264	206028895
CTSE_chr1_206004264_206028895	0/0	t0002	1024	34	28	2	0	2	2	copy fasta	CTSE	chr1	206004264	206028895
CTSE_chr1_206004264_206028895	0/0	t0003	1024	6	6	0	0	0	0	copy fasta	CTSE	chr1	206004264	206028895
CTSE_chr1_206004264_206028895	0/0	t0004	1024	5	5	0	0	0	0	copy fasta	CTSE	chr1	206004264	206028895
CTSE_chr1_206004264_206028895	0/0	t0005	1024	4	4	0	0	0	0	copy fasta	CTSE	chr1	206004264	206028895
CTSE_chr1_206004264_206028895	0/0	t0006	1024	3	3	0	0	0	0	copy fasta	CTSE	chr1	206004264	206028895
CTSE_chr1_206004264_206028895	0/0	t0007	1024	3	3	0	0	0	0	copy fasta	CTSE	chr1	206004264	206028895
CTSE_chr1_206004264_206028895	0/0	t0008	1024	3	2	1	0	0	0	copy fasta	CTSE	chr1	206004264	206028895
CTSE_chr1_206004264_206028895	0/0	t0009	1024	2	0	2	0	0	0	copy fasta	CTSE	chr1	206004264	206028895
CTSE_chr1_206004264_206028895	0/0	t0010	1024	2	2	0	0	0	0	copy fasta	CTSE	chr1	206004264	206028895
CTSE_chr1_206004264_206028895	0/0	t0011	1024	2	2	0	0	0	0	copy fasta	CTSE	chr1	206004264	206028895
CTSE_chr1_206004264_206028895	0/0	t0012	1024	2	2	0	0	0	0	copy fasta	CTSE	chr1	206004264	206028895
CTSE_chr1_206004264_206028895	0/0	t0013	1024	2	2	0	0	0	0	copy fasta	CTSE	chr1	206004264	206028895
CTSE_chr1_206004264_206028895	0/0	t0014	1024	1	1	0	0	0	0	copy fasta	CTSE	chr1	206004264	206028895
CTSE_chr1_206004264_206028895	0/0	t0015	1024	1	1	0	0	0	0	copy fasta	CTSE	chr1	206004264	206028895
CTSE_chr1_206004264_206028895	0/0	t0016	1024	1	1	0	0	0	0	copy fasta	CTSE	chr1	206004264	206028895
CTSE_chr1_206004264_206028895	0/0	t0017	1024	1	1	0	0	0	0	copy fasta	CTSE	chr1	206004264	206028895
CTSE_chr1_206004264_206028895	0/0	t0018	1024	1	0	0	1	0	0	copy fasta	CTSE	chr1	206004264	206028895
CTSE_chr1_206004264_206028895	0/0	t0019	1024	1	0	1	0	0	0	copy fasta	CTSE	chr1	206004264	206028895
CTSE_chr1_206004264_206028895	0/0	t0020	1024	1	0	0	1	0	0	copy fasta	CTSE	chr1	206004264	206028895
CTSE_chr1_206004264_206028895	0/0	t0021	1024	1	1	0	0	0	0	copy fasta	CTSE	chr1	206004264	206028895
CTSE_chr1_206004264_206028895	0/0	t0022	1024	1	0	0	0	0	1	copy fasta	CTSE	chr1	206004264	206028895
CTSF_chr11_66558464_66573606	1/1	t0001	590	284	66	46	134	11	25	copy fasta	CTSF	chr11	66558464	66573606
CTSF_chr11_66558464_66573606	0/0	t0002	590	78	23	7	39	1	8	copy fasta	CTSF	chr11	66558464	66573606
CTSF_chr11_66558464_66573606	0/0	t0003	590	40	0	5	30	2	3	copy fasta	CTSF	chr11	66558464	66573606
CTSF_chr11_66558464_66573606	0/0	t0004	590	5	3	2	0	0	0	copy fasta	CTSF	chr11	66558464	66573606
CTSF_chr11_66558464_66573606	0/0	t0005	590	1	0	1	0	0	0	copy fasta	CTSF	chr11	66558464	66573606
CTSF_chr11_66558464_66573606	0/0	t0006	590	1	0	0	1	0	0	copy fasta	CTSF	chr11	66558464	66573606
CTSF_chr11_66558464_66573606	0/0	t0007	590	1	0	0	1	0	0	copy fasta	CTSF	chr11	66558464	66573606