JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CXorf38_chrX_40621921_40652561	0/0	t0034	3284	1	0	0	1	0	0	copy fasta	CXorf38	chrX	40621921	40652561
CXorf38_chrX_40621921_40652561	0/0	t0035	3282	1	0	0	1	0	0	copy fasta	CXorf38	chrX	40621921	40652561
CXorf38_chrX_40621921_40652561	0/0	t0036	3288	1	1	0	0	0	0	copy fasta	CXorf38	chrX	40621921	40652561
CXorf38_chrX_40621921_40652561	0/0	t0037	3282	1	0	1	0	0	0	copy fasta	CXorf38	chrX	40621921	40652561
CXorf38_chrX_40621921_40652561	0/0	t0038	3285	1	0	0	0	0	1	copy fasta	CXorf38	chrX	40621921	40652561
CXorf38_chrX_40621921_40652561	0/0	t0039	3283	1	1	0	0	0	0	copy fasta	CXorf38	chrX	40621921	40652561
CXorf38_chrX_40621921_40652561	0/0	t0040	3285	1	0	0	1	0	0	copy fasta	CXorf38	chrX	40621921	40652561
CXorf38_chrX_40621921_40652561	0/0	t0041	3281	1	1	0	0	0	0	copy fasta	CXorf38	chrX	40621921	40652561
CXorf38_chrX_40621921_40652561	0/0	t0042	3284	1	1	0	0	0	0	copy fasta	CXorf38	chrX	40621921	40652561
CXorf38_chrX_40621921_40652561	0/0	t0043	3286	1	0	0	1	0	0	copy fasta	CXorf38	chrX	40621921	40652561
CXorf38_chrX_40621921_40652561	0/0	t0044	3283	1	0	0	1	0	0	copy fasta	CXorf38	chrX	40621921	40652561
CXorf38_chrX_40621921_40652561	0/0	t0045	3285	1	0	0	1	0	0	copy fasta	CXorf38	chrX	40621921	40652561
CXorf38_chrX_40621921_40652561	0/0	t0046	3279	1	1	0	0	0	0	copy fasta	CXorf38	chrX	40621921	40652561
CXorf38_chrX_40621921_40652561	0/0	t0047	3280	1	0	0	0	0	1	copy fasta	CXorf38	chrX	40621921	40652561
CXorf38_chrX_40621921_40652561	0/0	t0048	3279	1	0	0	1	0	0	copy fasta	CXorf38	chrX	40621921	40652561
CXorf38_chrX_40621921_40652561	0/0	t0049	3285	1	0	0	0	0	1	copy fasta	CXorf38	chrX	40621921	40652561
CXorf38_chrX_40621921_40652561	0/0	t0050	3283	1	0	1	0	0	0	copy fasta	CXorf38	chrX	40621921	40652561
CXorf38_chrX_40621921_40652561	0/0	t0051	3287	1	0	1	0	0	0	copy fasta	CXorf38	chrX	40621921	40652561
CXorf38_chrX_40621921_40652561	0/0	t0052	3284	1	0	0	1	0	0	copy fasta	CXorf38	chrX	40621921	40652561
CXorf38_chrX_40621921_40652561	0/0	t0053	3285	1	0	0	0	1	0	copy fasta	CXorf38	chrX	40621921	40652561
CXorf38_chrX_40621921_40652561	0/0	t0054	3284	1	0	0	1	0	0	copy fasta	CXorf38	chrX	40621921	40652561
CXorf38_chrX_40621921_40652561	0/0	t0055	3285	1	0	0	1	0	0	copy fasta	CXorf38	chrX	40621921	40652561
CXorf38_chrX_40621921_40652561	0/0	t0056	3286	1	0	0	1	0	0	copy fasta	CXorf38	chrX	40621921	40652561
CXorf38_chrX_40621921_40652561	0/0	t0057	3286	1	0	1	0	0	0	copy fasta	CXorf38	chrX	40621921	40652561
CXorf38_chrX_40621921_40652561	0/0	t0058	3284	1	1	0	0	0	0	copy fasta	CXorf38	chrX	40621921	40652561
CXorf38_chrX_40621921_40652561	0/0	t0059	3279	1	0	0	1	0	0	copy fasta	CXorf38	chrX	40621921	40652561
CXorf38_chrX_40621921_40652561	0/0	t0060	3284	1	0	0	0	0	1	copy fasta	CXorf38	chrX	40621921	40652561
CXorf38_chrX_40621921_40652561	0/0	t0061	3280	1	0	0	1	0	0	copy fasta	CXorf38	chrX	40621921	40652561
CXorf49B_chrX_71758349_71772204	0/0	t0001	250	95	26	21	29	7	12	copy fasta	CXorf49B	chrX	71758349	71772204
CXorf49_chrX_71709371_71723285	0/0	t0001	309	66	13	18	20	4	11	copy fasta	CXorf49	chrX	71709371	71723285
CXorf49_chrX_71709371_71723285	0/0	t0002	310	3	0	2	0	0	1	copy fasta	CXorf49	chrX	71709371	71723285
CXorf49_chrX_71709371_71723285	0/0	t0003	309	1	1	0	0	0	0	copy fasta	CXorf49	chrX	71709371	71723285
CXorf49_chrX_71709371_71723285	0/0	t0004	310	1	0	0	1	0	0	copy fasta	CXorf49	chrX	71709371	71723285
CXorf49_chrX_71709371_71723285	0/0	t0005	310	1	1	0	0	0	0	copy fasta	CXorf49	chrX	71709371	71723285
CXorf49_chrX_71709371_71723285	0/0	t0006	312	1	0	0	0	0	1	copy fasta	CXorf49	chrX	71709371	71723285
CXorf51A_chrX_146809106_146819744	0/0	t0001	123	251	57	54	105	13	22	copy fasta	CXorf51A	chrX	146809106	146819744
CXorf51A_chrX_146809106_146819744	0/0	t0002	22	13	0	1	4	0	8	copy fasta	CXorf51A	chrX	146809106	146819744
CXorf51B_chrX_146804771_146815411	0/0	t0001	125	260	66	49	103	11	31	copy fasta	CXorf51B	chrX	146804771	146815411
CXorf51B_chrX_146804771_146815411	0/0	t0002	22	9	1	1	4	2	1	copy fasta	CXorf51B	chrX	146804771	146815411
CXorf51B_chrX_146804771_146815411	0/0	t0003	128	1	0	1	0	0	0	copy fasta	CXorf51B	chrX	146804771	146815411
CXorf51B_chrX_146804771_146815411	0/0	t0004	124	1	0	0	1	0	0	copy fasta	CXorf51B	chrX	146804771	146815411
CXorf51B_chrX_146804771_146815411	0/0	t0005	125	1	0	1	0	0	0	copy fasta	CXorf51B	chrX	146804771	146815411
CXorf58_chrX_23903006_23944509	1/1	t0001	551	293	74	53	127	9	28	copy fasta	CXorf58	chrX	23903006	23944509
CXorf58_chrX_23903006_23944509	0/0	t0002	551	1	1	0	0	0	0	copy fasta	CXorf58	chrX	23903006	23944509
CXorf58_chrX_23903006_23944509	0/0	t0003	551	1	1	0	0	0	0	copy fasta	CXorf58	chrX	23903006	23944509
CXorf65_chrX_71098889_71111740	1/1	t0001	283	286	76	52	119	7	30	copy fasta	CXorf65	chrX	71098889	71111740
CXorf65_chrX_71098889_71111740	0/0	t0002	283	1	0	0	1	0	0	copy fasta	CXorf65	chrX	71098889	71111740
CXorf66_chrX_139950728_139970521	1/1	t0001	194	295	73	62	123	11	24	copy fasta	CXorf66	chrX	139950728	139970521
CXorf66_chrX_139950728_139970521	0/0	t0002	194	2	2	0	0	0	0	copy fasta	CXorf66	chrX	139950728	139970521
CXorf66_chrX_139950728_139970521	0/0	t0003	194	1	1	0	0	0	0	copy fasta	CXorf66	chrX	139950728	139970521