JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DPYSL3_chr5_147385808_147515068	0/0	t0022	3438	1	1	0	0	0	0	copy fasta	DPYSL3	chr5	147385808	147515068
DPYSL3_chr5_147385808_147515068	0/0	t0023	3438	1	1	0	0	0	0	copy fasta	DPYSL3	chr5	147385808	147515068
DPYSL4_chr10_132181948_132210759	0/0	t0001	930	116	2	1	107	0	6	copy fasta	DPYSL4	chr10	132181948	132210759
DPYSL4_chr10_132181948_132210759	0/1	t0002	934	98	14	25	39	5	14	copy fasta	DPYSL4	chr10	132181948	132210759
DPYSL4_chr10_132181948_132210759	1/0	t0003	946	34	9	11	8	1	4	copy fasta	DPYSL4	chr10	132181948	132210759
DPYSL4_chr10_132181948_132210759	0/0	t0004	930	22	12	1	8	0	1	copy fasta	DPYSL4	chr10	132181948	132210759
DPYSL4_chr10_132181948_132210759	0/0	t0005	941	21	0	8	0	2	11	copy fasta	DPYSL4	chr10	132181948	132210759
DPYSL4_chr10_132181948_132210759	0/0	t0006	934	19	0	1	18	0	0	copy fasta	DPYSL4	chr10	132181948	132210759
DPYSL4_chr10_132181948_132210759	0/0	t0007	934	16	13	2	1	0	0	copy fasta	DPYSL4	chr10	132181948	132210759
DPYSL4_chr10_132181948_132210759	0/0	t0008	938	15	6	6	0	1	2	copy fasta	DPYSL4	chr10	132181948	132210759
DPYSL4_chr10_132181948_132210759	0/0	t0009	934	14	5	5	2	0	2	copy fasta	DPYSL4	chr10	132181948	132210759
DPYSL4_chr10_132181948_132210759	0/0	t0010	938	8	8	0	0	0	0	copy fasta	DPYSL4	chr10	132181948	132210759
DPYSL4_chr10_132181948_132210759	0/0	t0011	950	8	5	2	0	1	0	copy fasta	DPYSL4	chr10	132181948	132210759
DPYSL4_chr10_132181948_132210759	0/0	t0012	930	7	6	1	0	0	0	copy fasta	DPYSL4	chr10	132181948	132210759
DPYSL4_chr10_132181948_132210759	0/0	t0013	934	4	0	4	0	0	0	copy fasta	DPYSL4	chr10	132181948	132210759
DPYSL4_chr10_132181948_132210759	0/0	t0014	934	4	1	0	2	1	0	copy fasta	DPYSL4	chr10	132181948	132210759
DPYSL4_chr10_132181948_132210759	0/0	t0015	934	3	3	0	0	0	0	copy fasta	DPYSL4	chr10	132181948	132210759
DPYSL4_chr10_132181948_132210759	0/0	t0016	934	3	0	2	0	1	0	copy fasta	DPYSL4	chr10	132181948	132210759
DPYSL4_chr10_132181948_132210759	0/0	t0017	934	2	1	1	0	0	0	copy fasta	DPYSL4	chr10	132181948	132210759
DPYSL4_chr10_132181948_132210759	0/0	t0018	938	2	0	0	0	2	0	copy fasta	DPYSL4	chr10	132181948	132210759
DPYSL4_chr10_132181948_132210759	0/0	t0019	938	2	1	1	0	0	0	copy fasta	DPYSL4	chr10	132181948	132210759
DPYSL4_chr10_132181948_132210759	0/0	t0020	930	2	2	0	0	0	0	copy fasta	DPYSL4	chr10	132181948	132210759
DPYSL4_chr10_132181948_132210759	0/0	t0021	951	2	2	0	0	0	0	copy fasta	DPYSL4	chr10	132181948	132210759
DPYSL4_chr10_132181948_132210759	0/0	t0022	938	1	0	0	0	0	1	copy fasta	DPYSL4	chr10	132181948	132210759
DPYSL4_chr10_132181948_132210759	0/0	t0023	938	1	1	0	0	0	0	copy fasta	DPYSL4	chr10	132181948	132210759
DPYSL4_chr10_132181948_132210759	0/0	t0024	938	1	0	0	0	0	1	copy fasta	DPYSL4	chr10	132181948	132210759
DPYSL4_chr10_132181948_132210759	0/0	t0025	941	1	0	1	0	0	0	copy fasta	DPYSL4	chr10	132181948	132210759
DPYSL4_chr10_132181948_132210759	0/0	t0026	938	1	1	0	0	0	0	copy fasta	DPYSL4	chr10	132181948	132210759
DPYSL4_chr10_132181948_132210759	0/0	t0027	946	1	1	0	0	0	0	copy fasta	DPYSL4	chr10	132181948	132210759
DPYSL4_chr10_132181948_132210759	0/0	t0028	946	1	1	0	0	0	0	copy fasta	DPYSL4	chr10	132181948	132210759
DPYSL4_chr10_132181948_132210759	0/0	t0029	946	1	0	1	0	0	0	copy fasta	DPYSL4	chr10	132181948	132210759
DPYSL4_chr10_132181948_132210759	0/0	t0030	946	1	1	0	0	0	0	copy fasta	DPYSL4	chr10	132181948	132210759
DPYSL4_chr10_132181948_132210759	0/0	t0031	950	1	1	0	0	0	0	copy fasta	DPYSL4	chr10	132181948	132210759
DPYSL4_chr10_132181948_132210759	0/0	t0032	971	1	1	0	0	0	0	copy fasta	DPYSL4	chr10	132181948	132210759
DPYSL4_chr10_132181948_132210759	0/0	t0033	931	1	0	0	1	0	0	copy fasta	DPYSL4	chr10	132181948	132210759
DPYSL4_chr10_132181948_132210759	0/0	t0034	930	1	0	0	1	0	0	copy fasta	DPYSL4	chr10	132181948	132210759
DPYSL4_chr10_132181948_132210759	0/0	t0035	930	1	0	0	1	0	0	copy fasta	DPYSL4	chr10	132181948	132210759
DPYSL4_chr10_132181948_132210759	0/0	t0036	934	1	0	1	0	0	0	copy fasta	DPYSL4	chr10	132181948	132210759
DPYSL4_chr10_132181948_132210759	0/0	t0037	934	1	1	0	0	0	0	copy fasta	DPYSL4	chr10	132181948	132210759
DPYSL5_chr2_26843132_26955351	0/0	t0001	3486	56	8	16	22	5	5	copy fasta	DPYSL5	chr2	26843132	26955351
DPYSL5_chr2_26843132_26955351	0/1	t0002	3483	51	11	14	16	4	5	copy fasta	DPYSL5	chr2	26843132	26955351
DPYSL5_chr2_26843132_26955351	1/0	t0003	3484	15	13	1	0	0	0	copy fasta	DPYSL5	chr2	26843132	26955351
DPYSL5_chr2_26843132_26955351	0/0	t0004	3485	11	2	4	5	0	0	copy fasta	DPYSL5	chr2	26843132	26955351
DPYSL5_chr2_26843132_26955351	0/0	t0005	3488	10	4	3	2	0	1	copy fasta	DPYSL5	chr2	26843132	26955351
DPYSL5_chr2_26843132_26955351	0/0	t0006	3481	9	2	2	2	2	1	copy fasta	DPYSL5	chr2	26843132	26955351
DPYSL5_chr2_26843132_26955351	0/0	t0007	3482	8	1	2	4	1	0	copy fasta	DPYSL5	chr2	26843132	26955351
DPYSL5_chr2_26843132_26955351	0/0	t0008	3490	7	4	2	1	0	0	copy fasta	DPYSL5	chr2	26843132	26955351
DPYSL5_chr2_26843132_26955351	0/0	t0009	3482	5	5	0	0	0	0	copy fasta	DPYSL5	chr2	26843132	26955351
DPYSL5_chr2_26843132_26955351	0/0	t0010	3484	4	2	2	0	0	0	copy fasta	DPYSL5	chr2	26843132	26955351
DPYSL5_chr2_26843132_26955351	0/0	t0011	3485	4	3	1	0	0	0	copy fasta	DPYSL5	chr2	26843132	26955351