JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ELOVL7_chr5_60746791_60849269	0/0	t0022	3029	1	1	0	0	0	0	copy fasta	ELOVL7	chr5	60746791	60849269
ELOVL7_chr5_60746791_60849269	0/0	t0023	3030	1	0	1	0	0	0	copy fasta	ELOVL7	chr5	60746791	60849269
ELOVL7_chr5_60746791_60849269	0/0	t0024	3029	1	0	0	1	0	0	copy fasta	ELOVL7	chr5	60746791	60849269
ELOVL7_chr5_60746791_60849269	0/0	t0025	3029	1	1	0	0	0	0	copy fasta	ELOVL7	chr5	60746791	60849269
ELP1_chr9_108862517_108939124	0/0	t0001	1915	103	32	10	52	2	7	copy fasta	ELP1	chr9	108862517	108939124
ELP1_chr9_108862517_108939124	0/0	t0002	1915	71	0	17	45	4	5	copy fasta	ELP1	chr9	108862517	108939124
ELP1_chr9_108862517_108939124	1/0	t0003	1915	60	3	20	24	4	8	copy fasta	ELP1	chr9	108862517	108939124
ELP1_chr9_108862517_108939124	0/0	t0004	1915	43	6	6	16	2	13	copy fasta	ELP1	chr9	108862517	108939124
ELP1_chr9_108862517_108939124	0/1	t0005	1915	35	2	9	21	0	2	copy fasta	ELP1	chr9	108862517	108939124
ELP1_chr9_108862517_108939124	0/0	t0006	1915	24	16	2	0	2	4	copy fasta	ELP1	chr9	108862517	108939124
ELP1_chr9_108862517_108939124	0/0	t0007	1915	17	0	0	17	0	0	copy fasta	ELP1	chr9	108862517	108939124
ELP1_chr9_108862517_108939124	0/0	t0008	1915	15	14	1	0	0	0	copy fasta	ELP1	chr9	108862517	108939124
ELP1_chr9_108862517_108939124	0/0	t0009	1915	11	9	2	0	0	0	copy fasta	ELP1	chr9	108862517	108939124
ELP1_chr9_108862517_108939124	0/0	t0010	1915	9	0	0	9	0	0	copy fasta	ELP1	chr9	108862517	108939124
ELP1_chr9_108862517_108939124	0/0	t0011	1915	6	0	0	6	0	0	copy fasta	ELP1	chr9	108862517	108939124
ELP1_chr9_108862517_108939124	0/0	t0012	1915	5	1	2	0	2	0	copy fasta	ELP1	chr9	108862517	108939124
ELP1_chr9_108862517_108939124	0/0	t0013	1915	4	3	1	0	0	0	copy fasta	ELP1	chr9	108862517	108939124
ELP1_chr9_108862517_108939124	0/0	t0014	1915	2	0	0	0	0	2	copy fasta	ELP1	chr9	108862517	108939124
ELP1_chr9_108862517_108939124	0/0	t0015	1915	2	0	0	2	0	0	copy fasta	ELP1	chr9	108862517	108939124
ELP1_chr9_108862517_108939124	0/0	t0016	1915	1	1	0	0	0	0	copy fasta	ELP1	chr9	108862517	108939124
ELP1_chr9_108862517_108939124	0/0	t0017	1915	1	0	0	0	0	1	copy fasta	ELP1	chr9	108862517	108939124
ELP1_chr9_108862517_108939124	0/0	t0018	1915	1	0	0	1	0	0	copy fasta	ELP1	chr9	108862517	108939124
ELP1_chr9_108862517_108939124	0/0	t0019	1915	1	0	0	1	0	0	copy fasta	ELP1	chr9	108862517	108939124
ELP1_chr9_108862517_108939124	0/0	t0020	1915	1	0	1	0	0	0	copy fasta	ELP1	chr9	108862517	108939124
ELP1_chr9_108862517_108939124	0/0	t0021	1915	1	0	0	0	0	1	copy fasta	ELP1	chr9	108862517	108939124
ELP1_chr9_108862517_108939124	0/0	t0022	1915	1	0	0	0	0	1	copy fasta	ELP1	chr9	108862517	108939124
ELP1_chr9_108862517_108939124	0/0	t0023	1915	1	0	1	0	0	0	copy fasta	ELP1	chr9	108862517	108939124
ELP1_chr9_108862517_108939124	0/0	t0024	1915	1	1	0	0	0	0	copy fasta	ELP1	chr9	108862517	108939124
ELP2_chr18_36124899_36185557	0/0	t0001	5951	54	1	7	34	2	10	copy fasta	ELP2	chr18	36124899	36185557
ELP2_chr18_36124899_36185557	0/0	t0002	5953	49	12	7	27	2	1	copy fasta	ELP2	chr18	36124899	36185557
ELP2_chr18_36124899_36185557	0/0	t0003	5959	36	5	9	16	2	4	copy fasta	ELP2	chr18	36124899	36185557
ELP2_chr18_36124899_36185557	0/0	t0004	5950	30	1	5	13	0	11	copy fasta	ELP2	chr18	36124899	36185557
ELP2_chr18_36124899_36185557	0/0	t0005	5951	20	0	0	18	1	1	copy fasta	ELP2	chr18	36124899	36185557
ELP2_chr18_36124899_36185557	0/1	t0006	5950	16	2	9	0	0	4	copy fasta	ELP2	chr18	36124899	36185557
ELP2_chr18_36124899_36185557	0/0	t0007	5960	12	2	0	10	0	0	copy fasta	ELP2	chr18	36124899	36185557
ELP2_chr18_36124899_36185557	0/0	t0008	5958	10	0	8	2	0	0	copy fasta	ELP2	chr18	36124899	36185557
ELP2_chr18_36124899_36185557	0/0	t0009	5959	8	8	0	0	0	0	copy fasta	ELP2	chr18	36124899	36185557
ELP2_chr18_36124899_36185557	0/0	t0010	5952	7	0	0	7	0	0	copy fasta	ELP2	chr18	36124899	36185557
ELP2_chr18_36124899_36185557	0/0	t0011	5952	6	6	0	0	0	0	copy fasta	ELP2	chr18	36124899	36185557
ELP2_chr18_36124899_36185557	0/0	t0012	5952	6	0	2	4	0	0	copy fasta	ELP2	chr18	36124899	36185557
ELP2_chr18_36124899_36185557	0/0	t0013	5954	6	2	0	4	0	0	copy fasta	ELP2	chr18	36124899	36185557
ELP2_chr18_36124899_36185557	0/0	t0014	5951	5	2	2	1	0	0	copy fasta	ELP2	chr18	36124899	36185557
ELP2_chr18_36124899_36185557	0/0	t0015	5954	5	5	0	0	0	0	copy fasta	ELP2	chr18	36124899	36185557
ELP2_chr18_36124899_36185557	0/0	t0016	5959	4	3	0	1	0	0	copy fasta	ELP2	chr18	36124899	36185557
ELP2_chr18_36124899_36185557	0/0	t0017	5948	4	3	1	0	0	0	copy fasta	ELP2	chr18	36124899	36185557
ELP2_chr18_36124899_36185557	0/0	t0018	5951	4	1	2	1	0	0	copy fasta	ELP2	chr18	36124899	36185557
ELP2_chr18_36124899_36185557	0/0	t0019	5950	4	0	1	0	3	0	copy fasta	ELP2	chr18	36124899	36185557
ELP2_chr18_36124899_36185557	0/0	t0020	5959	4	2	1	0	1	0	copy fasta	ELP2	chr18	36124899	36185557
ELP2_chr18_36124899_36185557	0/0	t0021	5951	3	0	0	3	0	0	copy fasta	ELP2	chr18	36124899	36185557
ELP2_chr18_36124899_36185557	0/0	t0022	5950	3	1	0	1	1	0	copy fasta	ELP2	chr18	36124899	36185557