JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	SAS	tseq	genename	chr	start	end
ELP2_chr18_36124899_36185557	0/0	t0023	5958	3	0	1	1	1	copy fasta	ELP2	chr18	36124899	36185557
ELP2_chr18_36124899_36185557	0/0	t0024	5952	3	1	1	1	0	copy fasta	ELP2	chr18	36124899	36185557
ELP2_chr18_36124899_36185557	0/0	t0025	5959	3	0	0	3	0	copy fasta	ELP2	chr18	36124899	36185557
ELP2_chr18_36124899_36185557	1/0	t0026	5952	2	1	0	0	0	copy fasta	ELP2	chr18	36124899	36185557
ELP2_chr18_36124899_36185557	0/0	t0027	5960	2	2	0	0	0	copy fasta	ELP2	chr18	36124899	36185557
ELP2_chr18_36124899_36185557	0/0	t0028	5949	2	0	0	2	0	copy fasta	ELP2	chr18	36124899	36185557
ELP2_chr18_36124899_36185557	0/0	t0029	5955	2	2	0	0	0	copy fasta	ELP2	chr18	36124899	36185557
ELP2_chr18_36124899_36185557	0/0	t0030	5953	2	0	0	2	0	copy fasta	ELP2	chr18	36124899	36185557
ELP2_chr18_36124899_36185557	0/0	t0031	5951	2	0	0	2	0	copy fasta	ELP2	chr18	36124899	36185557
ELP2_chr18_36124899_36185557	0/0	t0032	5952	2	0	1	0	1	copy fasta	ELP2	chr18	36124899	36185557
ELP2_chr18_36124899_36185557	0/0	t0033	5951	2	2	0	0	0	copy fasta	ELP2	chr18	36124899	36185557
ELP2_chr18_36124899_36185557	0/0	t0034	5952	1	1	0	0	0	copy fasta	ELP2	chr18	36124899	36185557
ELP2_chr18_36124899_36185557	0/0	t0035	5950	1	1	0	0	0	copy fasta	ELP2	chr18	36124899	36185557
ELP2_chr18_36124899_36185557	0/0	t0036	5957	1	1	0	0	0	copy fasta	ELP2	chr18	36124899	36185557
ELP2_chr18_36124899_36185557	0/0	t0037	5952	1	1	0	0	0	copy fasta	ELP2	chr18	36124899	36185557
ELP2_chr18_36124899_36185557	0/0	t0038	5952	1	1	0	0	0	copy fasta	ELP2	chr18	36124899	36185557
ELP2_chr18_36124899_36185557	0/0	t0039	5951	1	1	0	0	0	copy fasta	ELP2	chr18	36124899	36185557
ELP2_chr18_36124899_36185557	0/0	t0040	5950	1	1	0	0	0	copy fasta	ELP2	chr18	36124899	36185557
ELP2_chr18_36124899_36185557	0/0	t0041	5959	1	0	0	0	1	copy fasta	ELP2	chr18	36124899	36185557
ELP2_chr18_36124899_36185557	0/0	t0042	5960	1	1	0	0	0	copy fasta	ELP2	chr18	36124899	36185557
ELP2_chr18_36124899_36185557	0/0	t0043	5959	1	1	0	0	0	copy fasta	ELP2	chr18	36124899	36185557
ELP2_chr18_36124899_36185557	0/0	t0044	5950	1	0	0	1	0	copy fasta	ELP2	chr18	36124899	36185557
ELP2_chr18_36124899_36185557	0/0	t0045	5951	1	0	0	1	0	copy fasta	ELP2	chr18	36124899	36185557
ELP2_chr18_36124899_36185557	0/0	t0046	5952	1	0	0	1	0	copy fasta	ELP2	chr18	36124899	36185557
ELP2_chr18_36124899_36185557	0/0	t0047	5950	1	1	0	0	0	copy fasta	ELP2	chr18	36124899	36185557
ELP2_chr18_36124899_36185557	0/0	t0048	5951	1	0	0	1	0	copy fasta	ELP2	chr18	36124899	36185557
ELP2_chr18_36124899_36185557	0/0	t0049	5950	1	0	0	1	0	copy fasta	ELP2	chr18	36124899	36185557
ELP2_chr18_36124899_36185557	0/0	t0050	5950	1	1	0	0	0	copy fasta	ELP2	chr18	36124899	36185557
ELP2_chr18_36124899_36185557	0/0	t0051	5949	1	1	0	0	0	copy fasta	ELP2	chr18	36124899	36185557
ELP2_chr18_36124899_36185557	0/0	t0052	5951	1	1	0	0	0	copy fasta	ELP2	chr18	36124899	36185557
ELP2_chr18_36124899_36185557	0/0	t0053	5951	1	0	0	1	0	copy fasta	ELP2	chr18	36124899	36185557
ELP2_chr18_36124899_36185557	0/0	t0054	5953	1	0	0	1	0	copy fasta	ELP2	chr18	36124899	36185557
ELP2_chr18_36124899_36185557	0/0	t0055	5952	1	1	0	0	0	copy fasta	ELP2	chr18	36124899	36185557
ELP2_chr18_36124899_36185557	0/0	t0056	5950	1	0	1	0	0	copy fasta	ELP2	chr18	36124899	36185557
ELP2_chr18_36124899_36185557	0/0	t0057	5950	1	1	0	0	0	copy fasta	ELP2	chr18	36124899	36185557
ELP2_chr18_36124899_36185557	0/0	t0058	5951	1	0	0	0	1	copy fasta	ELP2	chr18	36124899	36185557
ELP2_chr18_36124899_36185557	0/0	t0059	5950	1	0	0	1	0	copy fasta	ELP2	chr18	36124899	36185557
ELP2_chr18_36124899_36185557	0/0	t0060	5952	1	0	1	0	0	copy fasta	ELP2	chr18	36124899	36185557
ELP2_chr18_36124899_36185557	0/0	t0061	5951	1	0	1	0	0	copy fasta	ELP2	chr18	36124899	36185557
ELP2_chr18_36124899_36185557	0/0	t0062	5951	1	0	0	1	0	copy fasta	ELP2	chr18	36124899	36185557
ELP2_chr18_36124899_36185557	0/0	t0063	5950	1	0	0	1	0	copy fasta	ELP2	chr18	36124899	36185557
ELP2_chr18_36124899_36185557	0/0	t0064	5951	1	1	0	0	0	copy fasta	ELP2	chr18	36124899	36185557
ELP2_chr18_36124899_36185557	0/0	t0065	5955	1	0	0	1	0	copy fasta	ELP2	chr18	36124899	36185557
ELP2_chr18_36124899_36185557	0/0	t0066	5954	1	0	0	1	0	copy fasta	ELP2	chr18	36124899	36185557
ELP2_chr18_36124899_36185557	0/0	t0067	5953	1	0	0	1	0	copy fasta	ELP2	chr18	36124899	36185557
ELP2_chr18_36124899_36185557	0/0	t0068	5951	1	0	0	1	0	copy fasta	ELP2	chr18	36124899	36185557
ELP2_chr18_36124899_36185557	0/0	t0069	5953	1	0	0	1	0	copy fasta	ELP2	chr18	36124899	36185557
ELP2_chr18_36124899_36185557	0/0	t0070	5951	1	1	0	0	0	copy fasta	ELP2	chr18	36124899	36185557
ELP2_chr18_36124899_36185557	0/0	t0071	5954	1	0	0	1	0	copy fasta	ELP2	chr18	36124899	36185557
ELP2_chr18_36124899_36185557	0/0	t0072	5953	1	1	0	0	0	copy fasta	ELP2	chr18	36124899	36185557