JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ELP2_chr18_36124899_36185557	0/0	t0073	5942	1	0	0	1	0	0	copy fasta	ELP2	chr18	36124899	36185557
ELP2_chr18_36124899_36185557	0/0	t0074	5952	1	1	0	0	0	0	copy fasta	ELP2	chr18	36124899	36185557
ELP2_chr18_36124899_36185557	0/0	t0075	5959	1	1	0	0	0	0	copy fasta	ELP2	chr18	36124899	36185557
ELP2_chr18_36124899_36185557	0/0	t0076	5952	1	0	0	0	0	1	copy fasta	ELP2	chr18	36124899	36185557
ELP2_chr18_36124899_36185557	0/0	t0077	5949	1	0	1	0	0	0	copy fasta	ELP2	chr18	36124899	36185557
ELP2_chr18_36124899_36185557	0/0	t0078	5960	1	1	0	0	0	0	copy fasta	ELP2	chr18	36124899	36185557
ELP2_chr18_36124899_36185557	0/0	t0079	5957	1	0	0	1	0	0	copy fasta	ELP2	chr18	36124899	36185557
ELP2_chr18_36124899_36185557	0/0	t0080	5957	1	0	1	0	0	0	copy fasta	ELP2	chr18	36124899	36185557
ELP2_chr18_36124899_36185557	0/0	t0081	5953	1	0	0	1	0	0	copy fasta	ELP2	chr18	36124899	36185557
ELP2_chr18_36124899_36185557	0/0	t0082	5958	1	1	0	0	0	0	copy fasta	ELP2	chr18	36124899	36185557
ELP2_chr18_36124899_36185557	0/0	t0083	5950	1	0	1	0	0	0	copy fasta	ELP2	chr18	36124899	36185557
ELP2_chr18_36124899_36185557	0/0	t0084	5949	1	0	0	1	0	0	copy fasta	ELP2	chr18	36124899	36185557
ELP2_chr18_36124899_36185557	0/0	t0085	5959	1	0	0	1	0	0	copy fasta	ELP2	chr18	36124899	36185557
ELP2_chr18_36124899_36185557	0/0	t0086	5958	1	0	0	1	0	0	copy fasta	ELP2	chr18	36124899	36185557
ELP2_chr18_36124899_36185557	0/0	t0087	5960	1	0	0	1	0	0	copy fasta	ELP2	chr18	36124899	36185557
ELP2_chr18_36124899_36185557	0/0	t0088	5959	1	0	1	0	0	0	copy fasta	ELP2	chr18	36124899	36185557
ELP2_chr18_36124899_36185557	0/0	t0089	5959	1	1	0	0	0	0	copy fasta	ELP2	chr18	36124899	36185557
ELP2_chr18_36124899_36185557	0/0	t0090	5957	1	1	0	0	0	0	copy fasta	ELP2	chr18	36124899	36185557
ELP3_chr8_28088139_28196153	1/0	t0001	1505	113	42	5	54	2	9	copy fasta	ELP3	chr8	28088139	28196153
ELP3_chr8_28088139_28196153	0/0	t0002	1505	104	11	26	46	8	13	copy fasta	ELP3	chr8	28088139	28196153
ELP3_chr8_28088139_28196153	0/1	t0003	1506	75	18	28	9	7	12	copy fasta	ELP3	chr8	28088139	28196153
ELP3_chr8_28088139_28196153	0/0	t0004	1507	59	3	11	44	0	1	copy fasta	ELP3	chr8	28088139	28196153
ELP3_chr8_28088139_28196153	0/0	t0005	1511	9	0	5	4	0	0	copy fasta	ELP3	chr8	28088139	28196153
ELP3_chr8_28088139_28196153	0/0	t0006	1507	7	7	0	0	0	0	copy fasta	ELP3	chr8	28088139	28196153
ELP3_chr8_28088139_28196153	0/0	t0007	1507	6	6	0	0	0	0	copy fasta	ELP3	chr8	28088139	28196153
ELP3_chr8_28088139_28196153	0/0	t0008	1507	6	0	0	6	0	0	copy fasta	ELP3	chr8	28088139	28196153
ELP3_chr8_28088139_28196153	0/0	t0009	1505	5	4	1	0	0	0	copy fasta	ELP3	chr8	28088139	28196153
ELP3_chr8_28088139_28196153	0/0	t0010	1506	3	0	0	3	0	0	copy fasta	ELP3	chr8	28088139	28196153
ELP3_chr8_28088139_28196153	0/0	t0011	1505	2	2	0	0	0	0	copy fasta	ELP3	chr8	28088139	28196153
ELP3_chr8_28088139_28196153	0/0	t0012	1506	1	0	0	0	1	0	copy fasta	ELP3	chr8	28088139	28196153
ELP3_chr8_28088139_28196153	0/0	t0013	1506	1	0	0	0	0	1	copy fasta	ELP3	chr8	28088139	28196153
ELP3_chr8_28088139_28196153	0/0	t0014	1505	1	0	0	1	0	0	copy fasta	ELP3	chr8	28088139	28196153
ELP3_chr8_28088139_28196153	0/0	t0015	1506	1	0	0	1	0	0	copy fasta	ELP3	chr8	28088139	28196153
ELP3_chr8_28088139_28196153	0/0	t0016	1506	1	0	0	1	0	0	copy fasta	ELP3	chr8	28088139	28196153
ELP3_chr8_28088139_28196153	0/0	t0017	1506	1	1	0	0	0	0	copy fasta	ELP3	chr8	28088139	28196153
ELP3_chr8_28088139_28196153	0/0	t0018	1506	1	0	0	1	0	0	copy fasta	ELP3	chr8	28088139	28196153
ELP3_chr8_28088139_28196153	0/0	t0019	1507	1	0	0	1	0	0	copy fasta	ELP3	chr8	28088139	28196153
ELP3_chr8_28088139_28196153	0/0	t0020	1506	1	0	0	1	0	0	copy fasta	ELP3	chr8	28088139	28196153
ELP4_chr11_31504767_31795324	0/0	t0001	6827	54	6	12	28	1	7	copy fasta	ELP4	chr11	31504767	31795324
ELP4_chr11_31504767_31795324	1/0	t0002	6819	34	0	3	22	2	6	copy fasta	ELP4	chr11	31504767	31795324
ELP4_chr11_31504767_31795324	0/0	t0003	6828	18	1	13	1	1	2	copy fasta	ELP4	chr11	31504767	31795324
ELP4_chr11_31504767_31795324	0/0	t0004	6828	14	3	1	6	0	4	copy fasta	ELP4	chr11	31504767	31795324
ELP4_chr11_31504767_31795324	0/0	t0005	6826	13	6	4	2	0	1	copy fasta	ELP4	chr11	31504767	31795324
ELP4_chr11_31504767_31795324	0/0	t0006	6824	7	2	4	1	0	0	copy fasta	ELP4	chr11	31504767	31795324
ELP4_chr11_31504767_31795324	0/0	t0007	6828	7	2	0	4	0	1	copy fasta	ELP4	chr11	31504767	31795324
ELP4_chr11_31504767_31795324	0/0	t0008	6826	7	7	0	0	0	0	copy fasta	ELP4	chr11	31504767	31795324
ELP4_chr11_31504767_31795324	0/0	t0009	6829	6	3	1	1	0	1	copy fasta	ELP4	chr11	31504767	31795324
ELP4_chr11_31504767_31795324	0/0	t0010	6820	5	0	1	4	0	0	copy fasta	ELP4	chr11	31504767	31795324
ELP4_chr11_31504767_31795324	0/1	t0011	6821	4	1	0	0	0	2	copy fasta	ELP4	chr11	31504767	31795324
ELP4_chr11_31504767_31795324	0/0	t0012	6829	4	0	0	3	0	1	copy fasta	ELP4	chr11	31504767	31795324