JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
EN2_chr7_155453129_155469831	0/0	t0026	2394	2	2	0	0	0	0	copy fasta	EN2	chr7	155453129	155469831
EN2_chr7_155453129_155469831	0/0	t0027	2392	2	2	0	0	0	0	copy fasta	EN2	chr7	155453129	155469831
EN2_chr7_155453129_155469831	0/0	t0028	2396	2	0	2	0	0	0	copy fasta	EN2	chr7	155453129	155469831
EN2_chr7_155453129_155469831	0/0	t0029	2398	2	2	0	0	0	0	copy fasta	EN2	chr7	155453129	155469831
EN2_chr7_155453129_155469831	0/0	t0030	2396	2	0	0	2	0	0	copy fasta	EN2	chr7	155453129	155469831
EN2_chr7_155453129_155469831	0/0	t0031	2394	1	1	0	0	0	0	copy fasta	EN2	chr7	155453129	155469831
EN2_chr7_155453129_155469831	0/0	t0032	2394	1	1	0	0	0	0	copy fasta	EN2	chr7	155453129	155469831
EN2_chr7_155453129_155469831	0/0	t0033	2394	1	0	0	1	0	0	copy fasta	EN2	chr7	155453129	155469831
EN2_chr7_155453129_155469831	0/0	t0034	2397	1	0	1	0	0	0	copy fasta	EN2	chr7	155453129	155469831
EN2_chr7_155453129_155469831	0/0	t0035	2394	1	0	0	1	0	0	copy fasta	EN2	chr7	155453129	155469831
EN2_chr7_155453129_155469831	0/0	t0036	2389	1	1	0	0	0	0	copy fasta	EN2	chr7	155453129	155469831
EN2_chr7_155453129_155469831	0/0	t0037	2391	1	0	0	0	0	1	copy fasta	EN2	chr7	155453129	155469831
EN2_chr7_155453129_155469831	0/0	t0038	2397	1	1	0	0	0	0	copy fasta	EN2	chr7	155453129	155469831
EN2_chr7_155453129_155469831	0/0	t0039	2389	1	0	1	0	0	0	copy fasta	EN2	chr7	155453129	155469831
EN2_chr7_155453129_155469831	0/0	t0040	2399	1	0	0	0	0	1	copy fasta	EN2	chr7	155453129	155469831
EN2_chr7_155453129_155469831	0/0	t0041	2397	1	0	0	0	1	0	copy fasta	EN2	chr7	155453129	155469831
EN2_chr7_155453129_155469831	0/0	t0042	2393	1	1	0	0	0	0	copy fasta	EN2	chr7	155453129	155469831
EN2_chr7_155453129_155469831	0/0	t0043	2394	1	1	0	0	0	0	copy fasta	EN2	chr7	155453129	155469831
EN2_chr7_155453129_155469831	0/0	t0044	2397	1	0	0	1	0	0	copy fasta	EN2	chr7	155453129	155469831
EN2_chr7_155453129_155469831	0/0	t0045	2397	1	0	0	1	0	0	copy fasta	EN2	chr7	155453129	155469831
EN2_chr7_155453129_155469831	0/0	t0046	2397	1	0	0	1	0	0	copy fasta	EN2	chr7	155453129	155469831
EN2_chr7_155453129_155469831	0/0	t0047	2398	1	0	0	0	1	0	copy fasta	EN2	chr7	155453129	155469831
EN2_chr7_155453129_155469831	0/0	t0048	2396	1	0	0	1	0	0	copy fasta	EN2	chr7	155453129	155469831
EN2_chr7_155453129_155469831	0/0	t0049	2398	1	0	0	0	0	1	copy fasta	EN2	chr7	155453129	155469831
EN2_chr7_155453129_155469831	0/0	t0050	2396	1	0	0	0	0	1	copy fasta	EN2	chr7	155453129	155469831
EN2_chr7_155453129_155469831	0/0	t0051	2394	1	0	0	0	1	0	copy fasta	EN2	chr7	155453129	155469831
EN2_chr7_155453129_155469831	0/0	t0052	2368	1	1	0	0	0	0	copy fasta	EN2	chr7	155453129	155469831
EN2_chr7_155453129_155469831	0/0	t0053	2384	1	0	1	0	0	0	copy fasta	EN2	chr7	155453129	155469831
EN2_chr7_155453129_155469831	0/0	t0054	2397	1	0	0	1	0	0	copy fasta	EN2	chr7	155453129	155469831
EN2_chr7_155453129_155469831	0/0	t0055	2400	1	1	0	0	0	0	copy fasta	EN2	chr7	155453129	155469831
EN2_chr7_155453129_155469831	0/0	t0056	2396	1	1	0	0	0	0	copy fasta	EN2	chr7	155453129	155469831
EN2_chr7_155453129_155469831	0/0	t0057	2397	1	0	0	1	0	0	copy fasta	EN2	chr7	155453129	155469831
EN2_chr7_155453129_155469831	0/0	t0058	2397	1	0	0	1	0	0	copy fasta	EN2	chr7	155453129	155469831
EN2_chr7_155453129_155469831	0/0	t0059	2397	1	1	0	0	0	0	copy fasta	EN2	chr7	155453129	155469831
EN2_chr7_155453129_155469831	0/0	t0060	2396	1	0	0	1	0	0	copy fasta	EN2	chr7	155453129	155469831
EN2_chr7_155453129_155469831	0/0	t0061	2396	1	0	0	1	0	0	copy fasta	EN2	chr7	155453129	155469831
ENAH_chr1_225481829_225658123	0/0	t0001	11391	39	6	3	21	4	5	copy fasta	ENAH	chr1	225481829	225658123
ENAH_chr1_225481829_225658123	0/0	t0002	11391	28	1	5	19	3	0	copy fasta	ENAH	chr1	225481829	225658123
ENAH_chr1_225481829_225658123	0/0	t0003	11385	18	0	1	9	0	8	copy fasta	ENAH	chr1	225481829	225658123
ENAH_chr1_225481829_225658123	0/0	t0004	11391	13	3	4	2	2	2	copy fasta	ENAH	chr1	225481829	225658123
ENAH_chr1_225481829_225658123	0/0	t0005	11392	8	2	4	1	0	1	copy fasta	ENAH	chr1	225481829	225658123
ENAH_chr1_225481829_225658123	0/0	t0006	11392	7	0	3	4	0	0	copy fasta	ENAH	chr1	225481829	225658123
ENAH_chr1_225481829_225658123	0/0	t0007	11390	7	5	0	1	0	1	copy fasta	ENAH	chr1	225481829	225658123
ENAH_chr1_225481829_225658123	0/0	t0008	11391	6	4	2	0	0	0	copy fasta	ENAH	chr1	225481829	225658123
ENAH_chr1_225481829_225658123	0/0	t0009	11390	6	0	0	5	1	0	copy fasta	ENAH	chr1	225481829	225658123
ENAH_chr1_225481829_225658123	0/0	t0010	11386	6	6	0	0	0	0	copy fasta	ENAH	chr1	225481829	225658123
ENAH_chr1_225481829_225658123	0/0	t0011	11392	5	0	2	2	0	1	copy fasta	ENAH	chr1	225481829	225658123
ENAH_chr1_225481829_225658123	0/0	t0012	11391	5	2	0	0	1	2	copy fasta	ENAH	chr1	225481829	225658123
ENAH_chr1_225481829_225658123	0/0	t0013	11387	5	0	0	5	0	0	copy fasta	ENAH	chr1	225481829	225658123
ENAH_chr1_225481829_225658123	0/0	t0014	11384	5	0	0	1	0	4	copy fasta	ENAH	chr1	225481829	225658123