JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ENAH_chr1_225481829_225658123	0/0	t0115	11385	1	1	0	0	0	0	copy fasta	ENAH	chr1	225481829	225658123
ENAH_chr1_225481829_225658123	0/0	t0116	11391	1	0	0	0	1	0	copy fasta	ENAH	chr1	225481829	225658123
ENAM_chr4_70623744_70651824	1/1	t0001	2251	299	16	56	189	6	30	copy fasta	ENAM	chr4	70623744	70651824
ENAM_chr4_70623744_70651824	0/0	t0002	2249	17	13	2	1	0	1	copy fasta	ENAM	chr4	70623744	70651824
ENAM_chr4_70623744_70651824	0/0	t0003	2251	14	13	1	0	0	0	copy fasta	ENAM	chr4	70623744	70651824
ENAM_chr4_70623744_70651824	0/0	t0004	2251	12	10	2	0	0	0	copy fasta	ENAM	chr4	70623744	70651824
ENAM_chr4_70623744_70651824	0/0	t0005	2251	12	12	0	0	0	0	copy fasta	ENAM	chr4	70623744	70651824
ENAM_chr4_70623744_70651824	0/0	t0006	2251	9	0	0	9	0	0	copy fasta	ENAM	chr4	70623744	70651824
ENAM_chr4_70623744_70651824	0/0	t0007	2250	9	9	0	0	0	0	copy fasta	ENAM	chr4	70623744	70651824
ENAM_chr4_70623744_70651824	0/0	t0008	2251	8	2	2	0	0	4	copy fasta	ENAM	chr4	70623744	70651824
ENAM_chr4_70623744_70651824	0/0	t0009	2249	5	1	0	1	0	3	copy fasta	ENAM	chr4	70623744	70651824
ENAM_chr4_70623744_70651824	0/0	t0010	2251	3	3	0	0	0	0	copy fasta	ENAM	chr4	70623744	70651824
ENAM_chr4_70623744_70651824	0/0	t0011	2251	3	2	1	0	0	0	copy fasta	ENAM	chr4	70623744	70651824
ENAM_chr4_70623744_70651824	0/0	t0012	2251	2	2	0	0	0	0	copy fasta	ENAM	chr4	70623744	70651824
ENAM_chr4_70623744_70651824	0/0	t0013	2251	2	0	0	2	0	0	copy fasta	ENAM	chr4	70623744	70651824
ENAM_chr4_70623744_70651824	0/0	t0014	2251	2	0	2	0	0	0	copy fasta	ENAM	chr4	70623744	70651824
ENAM_chr4_70623744_70651824	0/0	t0015	2249	2	1	1	0	0	0	copy fasta	ENAM	chr4	70623744	70651824
ENAM_chr4_70623744_70651824	0/0	t0016	2250	1	0	0	1	0	0	copy fasta	ENAM	chr4	70623744	70651824
ENAM_chr4_70623744_70651824	0/0	t0017	2251	1	1	0	0	0	0	copy fasta	ENAM	chr4	70623744	70651824
ENAM_chr4_70623744_70651824	0/0	t0018	2251	1	0	0	0	0	1	copy fasta	ENAM	chr4	70623744	70651824
ENAM_chr4_70623744_70651824	0/0	t0019	2249	1	1	0	0	0	0	copy fasta	ENAM	chr4	70623744	70651824
ENAM_chr4_70623744_70651824	0/0	t0020	2251	1	0	0	0	0	1	copy fasta	ENAM	chr4	70623744	70651824
ENAM_chr4_70623744_70651824	0/0	t0021	2250	1	0	1	0	0	0	copy fasta	ENAM	chr4	70623744	70651824
ENAM_chr4_70623744_70651824	0/0	t0022	2251	1	0	1	0	0	0	copy fasta	ENAM	chr4	70623744	70651824
ENAM_chr4_70623744_70651824	0/0	t0023	2251	1	0	0	1	0	0	copy fasta	ENAM	chr4	70623744	70651824
ENAM_chr4_70623744_70651824	0/0	t0024	2251	1	0	0	1	0	0	copy fasta	ENAM	chr4	70623744	70651824
ENAM_chr4_70623744_70651824	0/0	t0025	2250	1	0	0	1	0	0	copy fasta	ENAM	chr4	70623744	70651824
ENAM_chr4_70623744_70651824	0/0	t0026	2251	1	0	1	0	0	0	copy fasta	ENAM	chr4	70623744	70651824
ENC1_chr5_74622409_74645728	0/1	t0001	3052	251	45	57	111	9	28	copy fasta	ENC1	chr5	74622409	74645728
ENC1_chr5_74622409_74645728	0/0	t0002	3052	98	6	14	61	3	14	copy fasta	ENC1	chr5	74622409	74645728
ENC1_chr5_74622409_74645728	0/0	t0003	3053	12	5	2	1	2	2	copy fasta	ENC1	chr5	74622409	74645728
ENC1_chr5_74622409_74645728	0/0	t0004	3053	12	9	3	0	0	0	copy fasta	ENC1	chr5	74622409	74645728
ENC1_chr5_74622409_74645728	0/0	t0005	3052	10	3	2	0	2	3	copy fasta	ENC1	chr5	74622409	74645728
ENC1_chr5_74622409_74645728	0/0	t0006	3052	5	5	0	0	0	0	copy fasta	ENC1	chr5	74622409	74645728
ENC1_chr5_74622409_74645728	0/0	t0007	3053	5	5	0	0	0	0	copy fasta	ENC1	chr5	74622409	74645728
ENC1_chr5_74622409_74645728	0/0	t0008	3052	4	0	0	4	0	0	copy fasta	ENC1	chr5	74622409	74645728
ENC1_chr5_74622409_74645728	0/0	t0009	3053	4	3	1	0	0	0	copy fasta	ENC1	chr5	74622409	74645728
ENC1_chr5_74622409_74645728	0/0	t0010	3052	4	3	1	0	0	0	copy fasta	ENC1	chr5	74622409	74645728
ENC1_chr5_74622409_74645728	0/0	t0011	3053	4	0	0	4	0	0	copy fasta	ENC1	chr5	74622409	74645728
ENC1_chr5_74622409_74645728	0/0	t0012	3052	3	3	0	0	0	0	copy fasta	ENC1	chr5	74622409	74645728
ENC1_chr5_74622409_74645728	1/0	t0013	3052	3	0	2	0	0	0	copy fasta	ENC1	chr5	74622409	74645728
ENC1_chr5_74622409_74645728	0/0	t0014	3052	3	3	0	0	0	0	copy fasta	ENC1	chr5	74622409	74645728
ENC1_chr5_74622409_74645728	0/0	t0015	3189	1	0	1	0	0	0	copy fasta	ENC1	chr5	74622409	74645728
ENC1_chr5_74622409_74645728	0/0	t0016	3052	1	0	1	0	0	0	copy fasta	ENC1	chr5	74622409	74645728
ENC1_chr5_74622409_74645728	0/0	t0017	3053	1	1	0	0	0	0	copy fasta	ENC1	chr5	74622409	74645728
ENC1_chr5_74622409_74645728	0/0	t0018	3052	1	0	0	1	0	0	copy fasta	ENC1	chr5	74622409	74645728
ENC1_chr5_74622409_74645728	0/0	t0019	3053	1	1	0	0	0	0	copy fasta	ENC1	chr5	74622409	74645728
ENC1_chr5_74622409_74645728	0/0	t0020	3053	1	1	0	0	0	0	copy fasta	ENC1	chr5	74622409	74645728
ENC1_chr5_74622409_74645728	0/0	t0021	3052	1	0	0	1	0	0	copy fasta	ENC1	chr5	74622409	74645728
ENC1_chr5_74622409_74645728	0/0	t0022	3052	1	0	0	1	0	0	copy fasta	ENC1	chr5	74622409	74645728