JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ENPP1_chr6_131803020_131900155	0/0	t0014	4674	4	0	3	0	1	0	copy fasta	ENPP1	chr6	131803020	131900155
ENPP1_chr6_131803020_131900155	0/0	t0015	4657	3	3	0	0	0	0	copy fasta	ENPP1	chr6	131803020	131900155
ENPP1_chr6_131803020_131900155	0/0	t0016	4659	3	3	0	0	0	0	copy fasta	ENPP1	chr6	131803020	131900155
ENPP1_chr6_131803020_131900155	0/0	t0017	4660	3	3	0	0	0	0	copy fasta	ENPP1	chr6	131803020	131900155
ENPP1_chr6_131803020_131900155	0/0	t0018	4661	3	0	0	3	0	0	copy fasta	ENPP1	chr6	131803020	131900155
ENPP1_chr6_131803020_131900155	0/0	t0019	4658	3	3	0	0	0	0	copy fasta	ENPP1	chr6	131803020	131900155
ENPP1_chr6_131803020_131900155	0/0	t0020	4657	3	2	1	0	0	0	copy fasta	ENPP1	chr6	131803020	131900155
ENPP1_chr6_131803020_131900155	0/0	t0021	4655	2	2	0	0	0	0	copy fasta	ENPP1	chr6	131803020	131900155
ENPP1_chr6_131803020_131900155	0/0	t0022	4662	2	0	0	2	0	0	copy fasta	ENPP1	chr6	131803020	131900155
ENPP1_chr6_131803020_131900155	0/0	t0023	4663	2	2	0	0	0	0	copy fasta	ENPP1	chr6	131803020	131900155
ENPP1_chr6_131803020_131900155	0/0	t0024	4659	2	2	0	0	0	0	copy fasta	ENPP1	chr6	131803020	131900155
ENPP1_chr6_131803020_131900155	0/0	t0025	4654	2	2	0	0	0	0	copy fasta	ENPP1	chr6	131803020	131900155
ENPP1_chr6_131803020_131900155	0/0	t0026	4658	2	2	0	0	0	0	copy fasta	ENPP1	chr6	131803020	131900155
ENPP1_chr6_131803020_131900155	0/0	t0027	4661	2	0	0	0	1	1	copy fasta	ENPP1	chr6	131803020	131900155
ENPP1_chr6_131803020_131900155	0/0	t0028	4661	2	2	0	0	0	0	copy fasta	ENPP1	chr6	131803020	131900155
ENPP1_chr6_131803020_131900155	0/0	t0029	4662	2	0	1	1	0	0	copy fasta	ENPP1	chr6	131803020	131900155
ENPP1_chr6_131803020_131900155	0/0	t0030	4661	2	0	0	2	0	0	copy fasta	ENPP1	chr6	131803020	131900155
ENPP1_chr6_131803020_131900155	0/0	t0031	4651	2	0	2	0	0	0	copy fasta	ENPP1	chr6	131803020	131900155
ENPP1_chr6_131803020_131900155	0/0	t0032	4662	2	0	1	1	0	0	copy fasta	ENPP1	chr6	131803020	131900155
ENPP1_chr6_131803020_131900155	0/0	t0033	4661	2	0	0	2	0	0	copy fasta	ENPP1	chr6	131803020	131900155
ENPP1_chr6_131803020_131900155	0/0	t0034	4658	2	2	0	0	0	0	copy fasta	ENPP1	chr6	131803020	131900155
ENPP1_chr6_131803020_131900155	0/0	t0035	4663	2	0	0	1	0	1	copy fasta	ENPP1	chr6	131803020	131900155
ENPP1_chr6_131803020_131900155	0/0	t0036	4656	1	1	0	0	0	0	copy fasta	ENPP1	chr6	131803020	131900155
ENPP1_chr6_131803020_131900155	0/0	t0037	4655	1	1	0	0	0	0	copy fasta	ENPP1	chr6	131803020	131900155
ENPP1_chr6_131803020_131900155	0/0	t0038	4657	1	0	0	0	0	1	copy fasta	ENPP1	chr6	131803020	131900155
ENPP1_chr6_131803020_131900155	0/0	t0039	4664	1	1	0	0	0	0	copy fasta	ENPP1	chr6	131803020	131900155
ENPP1_chr6_131803020_131900155	0/0	t0040	4658	1	1	0	0	0	0	copy fasta	ENPP1	chr6	131803020	131900155
ENPP1_chr6_131803020_131900155	0/0	t0041	4664	1	0	0	0	0	1	copy fasta	ENPP1	chr6	131803020	131900155
ENPP1_chr6_131803020_131900155	0/0	t0042	4658	1	1	0	0	0	0	copy fasta	ENPP1	chr6	131803020	131900155
ENPP1_chr6_131803020_131900155	0/0	t0043	4657	1	1	0	0	0	0	copy fasta	ENPP1	chr6	131803020	131900155
ENPP1_chr6_131803020_131900155	0/0	t0044	4655	1	1	0	0	0	0	copy fasta	ENPP1	chr6	131803020	131900155
ENPP1_chr6_131803020_131900155	0/0	t0045	4659	1	1	0	0	0	0	copy fasta	ENPP1	chr6	131803020	131900155
ENPP1_chr6_131803020_131900155	0/0	t0046	4659	1	1	0	0	0	0	copy fasta	ENPP1	chr6	131803020	131900155
ENPP1_chr6_131803020_131900155	0/0	t0047	4660	1	1	0	0	0	0	copy fasta	ENPP1	chr6	131803020	131900155
ENPP1_chr6_131803020_131900155	0/0	t0048	4660	1	0	1	0	0	0	copy fasta	ENPP1	chr6	131803020	131900155
ENPP1_chr6_131803020_131900155	0/0	t0049	4660	1	0	0	0	0	1	copy fasta	ENPP1	chr6	131803020	131900155
ENPP1_chr6_131803020_131900155	0/0	t0050	4664	1	1	0	0	0	0	copy fasta	ENPP1	chr6	131803020	131900155
ENPP1_chr6_131803020_131900155	0/0	t0051	4661	1	0	0	0	0	1	copy fasta	ENPP1	chr6	131803020	131900155
ENPP1_chr6_131803020_131900155	0/0	t0052	4659	1	0	0	0	0	1	copy fasta	ENPP1	chr6	131803020	131900155
ENPP1_chr6_131803020_131900155	0/0	t0053	4659	1	0	0	0	0	1	copy fasta	ENPP1	chr6	131803020	131900155
ENPP1_chr6_131803020_131900155	0/0	t0054	4660	1	0	0	1	0	0	copy fasta	ENPP1	chr6	131803020	131900155
ENPP1_chr6_131803020_131900155	0/0	t0055	4661	1	0	0	1	0	0	copy fasta	ENPP1	chr6	131803020	131900155
ENPP1_chr6_131803020_131900155	0/0	t0056	4662	1	0	0	1	0	0	copy fasta	ENPP1	chr6	131803020	131900155
ENPP1_chr6_131803020_131900155	0/0	t0057	4660	1	0	0	0	0	1	copy fasta	ENPP1	chr6	131803020	131900155
ENPP1_chr6_131803020_131900155	0/0	t0058	4662	1	0	0	0	0	1	copy fasta	ENPP1	chr6	131803020	131900155
ENPP1_chr6_131803020_131900155	0/0	t0059	4660	1	0	1	0	0	0	copy fasta	ENPP1	chr6	131803020	131900155
ENPP1_chr6_131803020_131900155	0/0	t0060	4659	1	1	0	0	0	0	copy fasta	ENPP1	chr6	131803020	131900155
ENPP1_chr6_131803020_131900155	0/0	t0061	4662	1	0	0	1	0	0	copy fasta	ENPP1	chr6	131803020	131900155
ENPP1_chr6_131803020_131900155	0/0	t0062	4660	1	1	0	0	0	0	copy fasta	ENPP1	chr6	131803020	131900155
ENPP1_chr6_131803020_131900155	0/0	t0063	4659	1	0	0	1	0	0	copy fasta	ENPP1	chr6	131803020	131900155