JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ENPP1_chr6_131803020_131900155	0/0	t0064	4660	1	0	0	1	0	0	copy fasta	ENPP1	chr6	131803020	131900155
ENPP1_chr6_131803020_131900155	0/0	t0065	4661	1	0	0	1	0	0	copy fasta	ENPP1	chr6	131803020	131900155
ENPP1_chr6_131803020_131900155	0/0	t0066	4656	1	1	0	0	0	0	copy fasta	ENPP1	chr6	131803020	131900155
ENPP1_chr6_131803020_131900155	0/0	t0067	4658	1	1	0	0	0	0	copy fasta	ENPP1	chr6	131803020	131900155
ENPP1_chr6_131803020_131900155	0/0	t0068	4658	1	1	0	0	0	0	copy fasta	ENPP1	chr6	131803020	131900155
ENPP1_chr6_131803020_131900155	0/0	t0069	4657	1	1	0	0	0	0	copy fasta	ENPP1	chr6	131803020	131900155
ENPP1_chr6_131803020_131900155	0/0	t0070	4658	1	1	0	0	0	0	copy fasta	ENPP1	chr6	131803020	131900155
ENPP1_chr6_131803020_131900155	0/0	t0071	4659	1	1	0	0	0	0	copy fasta	ENPP1	chr6	131803020	131900155
ENPP1_chr6_131803020_131900155	0/0	t0072	4657	1	1	0	0	0	0	copy fasta	ENPP1	chr6	131803020	131900155
ENPP1_chr6_131803020_131900155	0/0	t0073	4659	1	1	0	0	0	0	copy fasta	ENPP1	chr6	131803020	131900155
ENPP1_chr6_131803020_131900155	0/0	t0074	4659	1	0	0	1	0	0	copy fasta	ENPP1	chr6	131803020	131900155
ENPP1_chr6_131803020_131900155	0/0	t0075	4662	1	0	0	1	0	0	copy fasta	ENPP1	chr6	131803020	131900155
ENPP1_chr6_131803020_131900155	0/0	t0076	4662	1	0	1	0	0	0	copy fasta	ENPP1	chr6	131803020	131900155
ENPP1_chr6_131803020_131900155	0/0	t0077	4663	1	0	1	0	0	0	copy fasta	ENPP1	chr6	131803020	131900155
ENPP1_chr6_131803020_131900155	0/0	t0078	4658	1	0	0	1	0	0	copy fasta	ENPP1	chr6	131803020	131900155
ENPP1_chr6_131803020_131900155	0/0	t0079	4657	1	1	0	0	0	0	copy fasta	ENPP1	chr6	131803020	131900155
ENPP1_chr6_131803020_131900155	0/0	t0080	4650	1	1	0	0	0	0	copy fasta	ENPP1	chr6	131803020	131900155
ENPP1_chr6_131803020_131900155	0/0	t0081	4662	1	0	1	0	0	0	copy fasta	ENPP1	chr6	131803020	131900155
ENPP1_chr6_131803020_131900155	0/0	t0082	4659	1	1	0	0	0	0	copy fasta	ENPP1	chr6	131803020	131900155
ENPP1_chr6_131803020_131900155	0/0	t0083	4660	1	0	0	0	1	0	copy fasta	ENPP1	chr6	131803020	131900155
ENPP1_chr6_131803020_131900155	0/0	t0084	4661	1	0	0	0	0	1	copy fasta	ENPP1	chr6	131803020	131900155
ENPP1_chr6_131803020_131900155	0/0	t0085	4663	1	0	0	1	0	0	copy fasta	ENPP1	chr6	131803020	131900155
ENPP1_chr6_131803020_131900155	0/0	t0086	4660	1	0	0	1	0	0	copy fasta	ENPP1	chr6	131803020	131900155
ENPP1_chr6_131803020_131900155	0/0	t0087	4674	1	0	1	0	0	0	copy fasta	ENPP1	chr6	131803020	131900155
ENPP1_chr6_131803020_131900155	0/0	t0088	4662	1	0	0	1	0	0	copy fasta	ENPP1	chr6	131803020	131900155
ENPP1_chr6_131803020_131900155	0/0	t0089	4660	1	0	1	0	0	0	copy fasta	ENPP1	chr6	131803020	131900155
ENPP2_chr8_119552086_119643839	1/1	t0001	495	303	64	58	127	14	38	copy fasta	ENPP2	chr8	119552086	119643839
ENPP2_chr8_119552086_119643839	0/0	t0002	495	18	17	0	0	0	1	copy fasta	ENPP2	chr8	119552086	119643839
ENPP2_chr8_119552086_119643839	0/0	t0003	495	14	11	0	2	0	1	copy fasta	ENPP2	chr8	119552086	119643839
ENPP2_chr8_119552086_119643839	0/0	t0004	495	4	1	2	1	0	0	copy fasta	ENPP2	chr8	119552086	119643839
ENPP2_chr8_119552086_119643839	0/0	t0005	495	1	1	0	0	0	0	copy fasta	ENPP2	chr8	119552086	119643839
ENPP3_chr6_131632302_131752410	0/1	t0001	538	207	52	27	103	8	16	copy fasta	ENPP3	chr6	131632302	131752410
ENPP3_chr6_131632302_131752410	0/0	t0002	538	52	35	9	1	1	6	copy fasta	ENPP3	chr6	131632302	131752410
ENPP3_chr6_131632302_131752410	1/0	t0003	538	11	1	7	0	2	0	copy fasta	ENPP3	chr6	131632302	131752410
ENPP3_chr6_131632302_131752410	0/0	t0004	538	7	0	5	0	0	2	copy fasta	ENPP3	chr6	131632302	131752410
ENPP3_chr6_131632302_131752410	0/0	t0005	538	1	0	0	0	1	0	copy fasta	ENPP3	chr6	131632302	131752410
ENPP4_chr6_46124989_46151688	0/0	t0001	3281	96	9	26	36	6	19	copy fasta	ENPP4	chr6	46124989	46151688
ENPP4_chr6_46124989_46151688	0/0	t0002	3283	78	0	10	54	3	11	copy fasta	ENPP4	chr6	46124989	46151688
ENPP4_chr6_46124989_46151688	0/0	t0003	3283	70	20	10	38	0	2	copy fasta	ENPP4	chr6	46124989	46151688
ENPP4_chr6_46124989_46151688	1/1	t0004	3283	66	3	14	40	2	5	copy fasta	ENPP4	chr6	46124989	46151688
ENPP4_chr6_46124989_46151688	0/0	t0005	3283	51	10	8	32	1	0	copy fasta	ENPP4	chr6	46124989	46151688
ENPP4_chr6_46124989_46151688	0/0	t0006	3283	31	24	6	0	0	1	copy fasta	ENPP4	chr6	46124989	46151688
ENPP4_chr6_46124989_46151688	0/0	t0007	3281	9	9	0	0	0	0	copy fasta	ENPP4	chr6	46124989	46151688
ENPP4_chr6_46124989_46151688	0/0	t0008	3283	4	4	0	0	0	0	copy fasta	ENPP4	chr6	46124989	46151688
ENPP4_chr6_46124989_46151688	0/0	t0009	3283	3	3	0	0	0	0	copy fasta	ENPP4	chr6	46124989	46151688
ENPP4_chr6_46124989_46151688	0/0	t0010	3283	3	3	0	0	0	0	copy fasta	ENPP4	chr6	46124989	46151688
ENPP4_chr6_46124989_46151688	0/0	t0011	3283	2	0	0	2	0	0	copy fasta	ENPP4	chr6	46124989	46151688
ENPP4_chr6_46124989_46151688	0/0	t0012	3283	2	0	2	0	0	0	copy fasta	ENPP4	chr6	46124989	46151688
ENPP4_chr6_46124989_46151688	0/0	t0013	3281	2	0	0	2	0	0	copy fasta	ENPP4	chr6	46124989	46151688
ENPP4_chr6_46124989_46151688	0/0	t0014	3283	1	0	0	1	0	0	copy fasta	ENPP4	chr6	46124989	46151688