Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
AGXT_chr2_240863824_240885500	0/0	t0006	1722	17	3	10	0	2	2	copy fasta	AGXT	chr2	240863824	240885500
AGXT_chr2_240863824_240885500	0/0	t0007	1722	13	12	1	0	0	0	copy fasta	AGXT	chr2	240863824	240885500
AGXT_chr2_240863824_240885500	0/0	t0008	1722	11	11	0	0	0	0	copy fasta	AGXT	chr2	240863824	240885500
AGXT_chr2_240863824_240885500	0/0	t0009	1722	6	6	0	0	0	0	copy fasta	AGXT	chr2	240863824	240885500
AGXT_chr2_240863824_240885500	0/0	t0010	1722	5	4	1	0	0	0	copy fasta	AGXT	chr2	240863824	240885500
AGXT_chr2_240863824_240885500	0/0	t0011	1722	5	5	0	0	0	0	copy fasta	AGXT	chr2	240863824	240885500
AGXT_chr2_240863824_240885500	0/0	t0012	1722	3	0	1	0	0	2	copy fasta	AGXT	chr2	240863824	240885500
AGXT_chr2_240863824_240885500	0/0	t0013	1722	3	3	0	0	0	0	copy fasta	AGXT	chr2	240863824	240885500
AGXT_chr2_240863824_240885500	0/0	t0014	1722	2	0	0	2	0	0	copy fasta	AGXT	chr2	240863824	240885500
AGXT_chr2_240863824_240885500	0/0	t0015	1722	2	0	2	0	0	0	copy fasta	AGXT	chr2	240863824	240885500
AGXT_chr2_240863824_240885500	0/0	t0016	1722	2	2	0	0	0	0	copy fasta	AGXT	chr2	240863824	240885500
AGXT_chr2_240863824_240885500	0/0	t0017	1722	2	0	0	2	0	0	copy fasta	AGXT	chr2	240863824	240885500
AGXT_chr2_240863824_240885500	0/0	t0018	1722	1	0	1	0	0	0	copy fasta	AGXT	chr2	240863824	240885500
AGXT_chr2_240863824_240885500	0/0	t0019	1722	1	0	1	0	0	0	copy fasta	AGXT	chr2	240863824	240885500
AGXT_chr2_240863824_240885500	0/0	t0020	1667	1	0	0	1	0	0	copy fasta	AGXT	chr2	240863824	240885500
AGXT_chr2_240863824_240885500	0/0	t0021	1722	1	0	0	1	0	0	copy fasta	AGXT	chr2	240863824	240885500
AGXT_chr2_240863824_240885500	0/0	t0022	1722	1	0	0	1	0	0	copy fasta	AGXT	chr2	240863824	240885500
AGXT_chr2_240863824_240885500	0/0	t0023	1722	1	0	1	0	0	0	copy fasta	AGXT	chr2	240863824	240885500
AGXT_chr2_240863824_240885500	0/0	t0024	1722	1	0	1	0	0	0	copy fasta	AGXT	chr2	240863824	240885500
AGXT_chr2_240863824_240885500	0/0	t0025	1722	1	0	0	0	0	1	copy fasta	AGXT	chr2	240863824	240885500
AGXT_chr2_240863824_240885500	0/0	t0026	1722	1	1	0	0	0	0	copy fasta	AGXT	chr2	240863824	240885500
AGXT_chr2_240863824_240885500	0/0	t0027	1722	1	0	0	1	0	0	copy fasta	AGXT	chr2	240863824	240885500
AGXT_chr2_240863824_240885500	0/0	t0028	1666	1	1	0	0	0	0	copy fasta	AGXT	chr2	240863824	240885500
AGXT_chr2_240863824_240885500	0/0	t0029	1722	1	1	0	0	0	0	copy fasta	AGXT	chr2	240863824	240885500
AGXT_chr2_240863824_240885500	0/0	t0030	1722	1	1	0	0	0	0	copy fasta	AGXT	chr2	240863824	240885500
AGXT_chr2_240863824_240885500	0/0	t0031	1722	1	0	0	1	0	0	copy fasta	AGXT	chr2	240863824	240885500
AHCTF1_chr1_246834098_246936948	1/1	t0001	2087	282	41	57	140	12	30	copy fasta	AHCTF1	chr1	246834098	246936948
AHCTF1_chr1_246834098_246936948	0/0	t0002	2087	30	22	4	0	0	4	copy fasta	AHCTF1	chr1	246834098	246936948
AHCTF1_chr1_246834098_246936948	0/0	t0003	2087	15	0	1	14	0	0	copy fasta	AHCTF1	chr1	246834098	246936948
AHCTF1_chr1_246834098_246936948	0/0	t0004	2087	10	9	1	0	0	0	copy fasta	AHCTF1	chr1	246834098	246936948
AHCTF1_chr1_246834098_246936948	0/0	t0005	2084	6	6	0	0	0	0	copy fasta	AHCTF1	chr1	246834098	246936948
AHCTF1_chr1_246834098_246936948	0/0	t0006	2084	6	6	0	0	0	0	copy fasta	AHCTF1	chr1	246834098	246936948
AHCTF1_chr1_246834098_246936948	0/0	t0007	2084	4	4	0	0	0	0	copy fasta	AHCTF1	chr1	246834098	246936948
AHCTF1_chr1_246834098_246936948	0/0	t0008	2087	3	3	0	0	0	0	copy fasta	AHCTF1	chr1	246834098	246936948
AHCTF1_chr1_246834098_246936948	0/0	t0009	2087	2	0	0	2	0	0	copy fasta	AHCTF1	chr1	246834098	246936948
AHCTF1_chr1_246834098_246936948	0/0	t0010	2087	2	0	2	0	0	0	copy fasta	AHCTF1	chr1	246834098	246936948
AHCTF1_chr1_246834098_246936948	0/0	t0011	2084	2	1	0	1	0	0	copy fasta	AHCTF1	chr1	246834098	246936948
AHCTF1_chr1_246834098_246936948	0/0	t0012	2087	2	0	2	0	0	0	copy fasta	AHCTF1	chr1	246834098	246936948
AHCTF1_chr1_246834098_246936948	0/0	t0013	2087	1	0	1	0	0	0	copy fasta	AHCTF1	chr1	246834098	246936948
AHCTF1_chr1_246834098_246936948	0/0	t0014	2087	1	1	0	0	0	0	copy fasta	AHCTF1	chr1	246834098	246936948
AHCTF1_chr1_246834098_246936948	0/0	t0015	2087	1	0	0	0	0	1	copy fasta	AHCTF1	chr1	246834098	246936948
AHCTF1_chr1_246834098_246936948	0/0	t0016	2087	1	0	1	0	0	0	copy fasta	AHCTF1	chr1	246834098	246936948
AHCTF1_chr1_246834098_246936948	0/0	t0017	2087	1	0	0	1	0	0	copy fasta	AHCTF1	chr1	246834098	246936948
AHCTF1_chr1_246834098_246936948	0/0	t0018	2087	1	0	0	1	0	0	copy fasta	AHCTF1	chr1	246834098	246936948
AHCTF1_chr1_246834098_246936948	0/0	t0019	2087	1	0	0	1	0	0	copy fasta	AHCTF1	chr1	246834098	246936948
AHCTF1_chr1_246834098_246936948	0/0	t0020	2087	1	1	0	0	0	0	copy fasta	AHCTF1	chr1	246834098	246936948
AHCTF1_chr1_246834098_246936948	0/0	t0021	2087	1	0	0	0	0	1	copy fasta	AHCTF1	chr1	246834098	246936948
AHCTF1_chr1_246834098_246936948	0/0	t0022	2087	1	1	0	0	0	0	copy fasta	AHCTF1	chr1	246834098	246936948
AHCTF1_chr1_246834098_246936948	0/0	t0023	2087	1	1	0	0	0	0	copy fasta	AHCTF1	chr1	246834098	246936948
AHCTF1_chr1_246834098_246936948	0/0	t0024	2087	1	0	1	0	0	0	copy fasta	AHCTF1	chr1	246834098	246936948