JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
EPHB6_chr7_142850076_142876093	0/0	t0004	931	12	5	2	2	0	3	copy fasta	EPHB6	chr7	142850076	142876093
EPHB6_chr7_142850076_142876093	0/0	t0005	930	5	5	0	0	0	0	copy fasta	EPHB6	chr7	142850076	142876093
EPHB6_chr7_142850076_142876093	0/0	t0006	931	4	4	0	0	0	0	copy fasta	EPHB6	chr7	142850076	142876093
EPHB6_chr7_142850076_142876093	0/0	t0007	931	4	4	0	0	0	0	copy fasta	EPHB6	chr7	142850076	142876093
EPHB6_chr7_142850076_142876093	0/0	t0008	931	2	0	0	2	0	0	copy fasta	EPHB6	chr7	142850076	142876093
EPHB6_chr7_142850076_142876093	0/0	t0009	930	1	1	0	0	0	0	copy fasta	EPHB6	chr7	142850076	142876093
EPHB6_chr7_142850076_142876093	0/0	t0010	931	1	0	0	1	0	0	copy fasta	EPHB6	chr7	142850076	142876093
EPHB6_chr7_142850076_142876093	0/0	t0011	931	1	0	0	0	0	1	copy fasta	EPHB6	chr7	142850076	142876093
EPHX1_chr1_225805124_225850563	1/1	t0001	268	380	90	62	169	13	44	copy fasta	EPHX1	chr1	225805124	225850563
EPHX1_chr1_225805124_225850563	0/0	t0002	268	36	3	12	18	1	2	copy fasta	EPHX1	chr1	225805124	225850563
EPHX1_chr1_225805124_225850563	0/0	t0003	268	4	2	2	0	0	0	copy fasta	EPHX1	chr1	225805124	225850563
EPHX1_chr1_225805124_225850563	0/0	t0004	268	1	0	0	1	0	0	copy fasta	EPHX1	chr1	225805124	225850563
EPHX1_chr1_225805124_225850563	0/0	t0005	268	1	1	0	0	0	0	copy fasta	EPHX1	chr1	225805124	225850563
EPHX2_chr8_27486143_27550564	1/1	t0001	1109	170	21	41	77	9	20	copy fasta	EPHX2	chr8	27486143	27550564
EPHX2_chr8_27486143_27550564	0/0	t0002	1109	96	21	7	55	2	11	copy fasta	EPHX2	chr8	27486143	27550564
EPHX2_chr8_27486143_27550564	0/0	t0003	1109	71	25	5	34	1	6	copy fasta	EPHX2	chr8	27486143	27550564
EPHX2_chr8_27486143_27550564	0/0	t0004	1109	22	20	2	0	0	0	copy fasta	EPHX2	chr8	27486143	27550564
EPHX2_chr8_27486143_27550564	0/0	t0005	1109	4	0	0	4	0	0	copy fasta	EPHX2	chr8	27486143	27550564
EPHX2_chr8_27486143_27550564	0/0	t0006	1109	3	0	0	3	0	0	copy fasta	EPHX2	chr8	27486143	27550564
EPHX2_chr8_27486143_27550564	0/0	t0007	1109	2	2	0	0	0	0	copy fasta	EPHX2	chr8	27486143	27550564
EPHX2_chr8_27486143_27550564	0/0	t0008	1109	2	2	0	0	0	0	copy fasta	EPHX2	chr8	27486143	27550564
EPHX2_chr8_27486143_27550564	0/0	t0009	1109	1	0	0	1	0	0	copy fasta	EPHX2	chr8	27486143	27550564
EPHX2_chr8_27486143_27550564	0/0	t0010	1109	1	0	0	0	0	1	copy fasta	EPHX2	chr8	27486143	27550564
EPHX2_chr8_27486143_27550564	0/0	t0011	1109	1	0	1	0	0	0	copy fasta	EPHX2	chr8	27486143	27550564
EPHX2_chr8_27486143_27550564	0/0	t0012	1109	1	1	0	0	0	0	copy fasta	EPHX2	chr8	27486143	27550564
EPHX3_chr19_15221919_15237448	0/1	t0001	756	311	78	64	125	11	32	copy fasta	EPHX3	chr19	15221919	15237448
EPHX3_chr19_15221919_15237448	1/0	t0002	756	61	1	6	35	5	13	copy fasta	EPHX3	chr19	15221919	15237448
EPHX3_chr19_15221919_15237448	0/0	t0003	756	1	1	0	0	0	0	copy fasta	EPHX3	chr19	15221919	15237448
EPHX3_chr19_15221919_15237448	0/0	t0004	756	1	0	0	0	0	1	copy fasta	EPHX3	chr19	15221919	15237448
EPHX4_chr1_92024985_92068538	1/1	t0001	348	227	80	51	55	11	28	copy fasta	EPHX4	chr1	92024985	92068538
EPHX4_chr1_92024985_92068538	0/0	t0002	329	8	6	1	0	1	0	copy fasta	EPHX4	chr1	92024985	92068538
EPHX4_chr1_92024985_92068538	0/0	t0003	348	1	0	0	1	0	0	copy fasta	EPHX4	chr1	92024985	92068538
EPM2AIP1_chr3_36980043_36998131	0/0	t0001	6263	85	9	12	54	5	5	copy fasta	EPM2AIP1	chr3	36980043	36998131
EPM2AIP1_chr3_36980043_36998131	0/0	t0002	6264	76	8	8	44	3	13	copy fasta	EPM2AIP1	chr3	36980043	36998131
EPM2AIP1_chr3_36980043_36998131	0/0	t0003	6266	26	2	9	5	5	5	copy fasta	EPM2AIP1	chr3	36980043	36998131
EPM2AIP1_chr3_36980043_36998131	0/0	t0004	6264	12	0	9	3	0	0	copy fasta	EPM2AIP1	chr3	36980043	36998131
EPM2AIP1_chr3_36980043_36998131	0/0	t0005	6267	10	0	6	3	0	1	copy fasta	EPM2AIP1	chr3	36980043	36998131
EPM2AIP1_chr3_36980043_36998131	0/1	t0006	6265	9	2	1	5	0	0	copy fasta	EPM2AIP1	chr3	36980043	36998131
EPM2AIP1_chr3_36980043_36998131	0/0	t0007	6264	8	0	3	5	0	0	copy fasta	EPM2AIP1	chr3	36980043	36998131
EPM2AIP1_chr3_36980043_36998131	0/0	t0008	6265	8	3	0	3	0	2	copy fasta	EPM2AIP1	chr3	36980043	36998131
EPM2AIP1_chr3_36980043_36998131	0/0	t0009	6256	8	6	2	0	0	0	copy fasta	EPM2AIP1	chr3	36980043	36998131
EPM2AIP1_chr3_36980043_36998131	0/0	t0010	6262	8	6	2	0	0	0	copy fasta	EPM2AIP1	chr3	36980043	36998131
EPM2AIP1_chr3_36980043_36998131	0/0	t0011	6267	8	0	0	7	0	1	copy fasta	EPM2AIP1	chr3	36980043	36998131
EPM2AIP1_chr3_36980043_36998131	0/0	t0012	6266	7	0	1	6	0	0	copy fasta	EPM2AIP1	chr3	36980043	36998131
EPM2AIP1_chr3_36980043_36998131	0/0	t0013	6264	6	1	1	2	1	1	copy fasta	EPM2AIP1	chr3	36980043	36998131
EPM2AIP1_chr3_36980043_36998131	0/0	t0014	6266	6	4	2	0	0	0	copy fasta	EPM2AIP1	chr3	36980043	36998131
EPM2AIP1_chr3_36980043_36998131	0/0	t0015	6265	6	1	0	5	0	0	copy fasta	EPM2AIP1	chr3	36980043	36998131
EPM2AIP1_chr3_36980043_36998131	0/0	t0016	6265	5	0	2	3	0	0	copy fasta	EPM2AIP1	chr3	36980043	36998131
EPM2AIP1_chr3_36980043_36998131	0/0	t0017	6265	5	5	0	0	0	0	copy fasta	EPM2AIP1	chr3	36980043	36998131
EPM2AIP1_chr3_36980043_36998131	0/0	t0018	6258	5	5	0	0	0	0	copy fasta	EPM2AIP1	chr3	36980043	36998131