JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
EPS15_chr1_51349263_51524266	0/0	t0020	2474	1	0	0	0	0	1	copy fasta	EPS15	chr1	51349263	51524266
EPS15_chr1_51349263_51524266	0/0	t0021	2474	1	1	0	0	0	0	copy fasta	EPS15	chr1	51349263	51524266
EPS15_chr1_51349263_51524266	0/0	t0022	2474	1	1	0	0	0	0	copy fasta	EPS15	chr1	51349263	51524266
EPS15_chr1_51349263_51524266	0/0	t0023	2469	1	1	0	0	0	0	copy fasta	EPS15	chr1	51349263	51524266
EPS15_chr1_51349263_51524266	0/0	t0024	2469	1	0	1	0	0	0	copy fasta	EPS15	chr1	51349263	51524266
EPS15_chr1_51349263_51524266	0/0	t0025	2474	1	1	0	0	0	0	copy fasta	EPS15	chr1	51349263	51524266
EPS15_chr1_51349263_51524266	0/0	t0026	2474	1	0	1	0	0	0	copy fasta	EPS15	chr1	51349263	51524266
EPS8L1_chr19_55070869_55092923	1/1	t0001	398	337	93	68	126	8	40	copy fasta	EPS8L1	chr19	55070869	55092923
EPS8L1_chr19_55070869_55092923	0/0	t0002	398	1	1	0	0	0	0	copy fasta	EPS8L1	chr19	55070869	55092923
EPS8L1_chr19_55070869_55092923	0/0	t0003	398	1	0	1	0	0	0	copy fasta	EPS8L1	chr19	55070869	55092923
EPS8L1_chr19_55070869_55092923	0/0	t0004	398	1	0	1	0	0	0	copy fasta	EPS8L1	chr19	55070869	55092923
EPS8L2_chr11_701231_732727	1/0	t0001	883	183	21	49	71	14	27	copy fasta	EPS8L2	chr11	701231	732727
EPS8L2_chr11_701231_732727	0/0	t0002	883	43	10	10	22	0	1	copy fasta	EPS8L2	chr11	701231	732727
EPS8L2_chr11_701231_732727	0/0	t0003	883	37	10	1	24	0	2	copy fasta	EPS8L2	chr11	701231	732727
EPS8L2_chr11_701231_732727	0/0	t0004	883	28	10	5	10	1	2	copy fasta	EPS8L2	chr11	701231	732727
EPS8L2_chr11_701231_732727	0/0	t0005	900	20	6	4	7	1	2	copy fasta	EPS8L2	chr11	701231	732727
EPS8L2_chr11_701231_732727	0/0	t0006	883	18	7	2	5	0	4	copy fasta	EPS8L2	chr11	701231	732727
EPS8L2_chr11_701231_732727	0/0	t0007	883	14	1	0	9	0	4	copy fasta	EPS8L2	chr11	701231	732727
EPS8L2_chr11_701231_732727	0/0	t0008	900	13	7	1	2	1	2	copy fasta	EPS8L2	chr11	701231	732727
EPS8L2_chr11_701231_732727	0/0	t0009	883	12	1	2	7	1	1	copy fasta	EPS8L2	chr11	701231	732727
EPS8L2_chr11_701231_732727	0/0	t0010	883	10	10	0	0	0	0	copy fasta	EPS8L2	chr11	701231	732727
EPS8L2_chr11_701231_732727	0/0	t0011	900	8	6	1	1	0	0	copy fasta	EPS8L2	chr11	701231	732727
EPS8L2_chr11_701231_732727	0/0	t0012	883	4	0	0	2	0	2	copy fasta	EPS8L2	chr11	701231	732727
EPS8L2_chr11_701231_732727	0/1	t0013	883	2	0	1	0	0	0	copy fasta	EPS8L2	chr11	701231	732727
EPS8L2_chr11_701231_732727	0/0	t0014	900	2	2	0	0	0	0	copy fasta	EPS8L2	chr11	701231	732727
EPS8L2_chr11_701231_732727	0/0	t0015	883	1	1	0	0	0	0	copy fasta	EPS8L2	chr11	701231	732727
EPS8L2_chr11_701231_732727	0/0	t0016	883	1	0	0	0	0	1	copy fasta	EPS8L2	chr11	701231	732727
EPS8L2_chr11_701231_732727	0/0	t0017	883	1	0	0	1	0	0	copy fasta	EPS8L2	chr11	701231	732727
EPS8L2_chr11_701231_732727	0/0	t0018	883	1	1	0	0	0	0	copy fasta	EPS8L2	chr11	701231	732727
EPS8L2_chr11_701231_732727	0/0	t0019	883	1	0	0	0	0	1	copy fasta	EPS8L2	chr11	701231	732727
EPS8L2_chr11_701231_732727	0/0	t0020	883	1	1	0	0	0	0	copy fasta	EPS8L2	chr11	701231	732727
EPS8L2_chr11_701231_732727	0/0	t0021	883	1	0	0	1	0	0	copy fasta	EPS8L2	chr11	701231	732727
EPS8L2_chr11_701231_732727	0/0	t0022	883	1	0	0	1	0	0	copy fasta	EPS8L2	chr11	701231	732727
EPS8L2_chr11_701231_732727	0/0	t0023	883	1	0	0	1	0	0	copy fasta	EPS8L2	chr11	701231	732727
EPS8L2_chr11_701231_732727	0/0	t0024	883	1	1	0	0	0	0	copy fasta	EPS8L2	chr11	701231	732727
EPS8L2_chr11_701231_732727	0/0	t0025	883	1	0	0	0	0	1	copy fasta	EPS8L2	chr11	701231	732727
EPS8L2_chr11_701231_732727	0/0	t0026	900	1	1	0	0	0	0	copy fasta	EPS8L2	chr11	701231	732727
EPS8L3_chr1_109745080_109768923	1/0	t0001	438	184	74	40	47	6	16	copy fasta	EPS8L3	chr1	109745080	109768923
EPS8L3_chr1_109745080_109768923	0/1	t0002	438	142	1	17	103	5	15	copy fasta	EPS8L3	chr1	109745080	109768923
EPS8L3_chr1_109745080_109768923	0/0	t0003	438	40	9	7	16	4	4	copy fasta	EPS8L3	chr1	109745080	109768923
EPS8L3_chr1_109745080_109768923	0/0	t0004	438	40	0	5	31	1	3	copy fasta	EPS8L3	chr1	109745080	109768923
EPS8L3_chr1_109745080_109768923	0/0	t0005	437	13	12	1	0	0	0	copy fasta	EPS8L3	chr1	109745080	109768923
EPS8L3_chr1_109745080_109768923	0/0	t0006	437	3	1	0	0	0	2	copy fasta	EPS8L3	chr1	109745080	109768923
EPS8L3_chr1_109745080_109768923	0/0	t0007	438	1	0	0	0	0	1	copy fasta	EPS8L3	chr1	109745080	109768923
EPS8L3_chr1_109745080_109768923	0/0	t0008	438	1	0	0	0	0	1	copy fasta	EPS8L3	chr1	109745080	109768923
EPS8L3_chr1_109745080_109768923	0/0	t0009	438	1	0	0	1	0	0	copy fasta	EPS8L3	chr1	109745080	109768923
EPS8L3_chr1_109745080_109768923	0/0	t0010	438	1	1	0	0	0	0	copy fasta	EPS8L3	chr1	109745080	109768923
EPS8_chr12_15615134_15794388	0/0	t0001	1434	76	40	13	19	0	4	copy fasta	EPS8	chr12	15615134	15794388
EPS8_chr12_15615134_15794388	0/0	t0002	1434	5	5	0	0	0	0	copy fasta	EPS8	chr12	15615134	15794388
EPS8_chr12_15615134_15794388	0/0	t0003	1434	4	3	1	0	0	0	copy fasta	EPS8	chr12	15615134	15794388