JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
EPS8_chr12_15615134_15794388	0/0	t0004	1434	4	4	0	0	0	0	copy fasta	EPS8	chr12	15615134	15794388
EPS8_chr12_15615134_15794388	0/0	t0005	1434	3	3	0	0	0	0	copy fasta	EPS8	chr12	15615134	15794388
EPS8_chr12_15615134_15794388	0/0	t0006	1434	2	2	0	0	0	0	copy fasta	EPS8	chr12	15615134	15794388
EPS8_chr12_15615134_15794388	0/1	t0007	1434	2	0	1	0	0	0	copy fasta	EPS8	chr12	15615134	15794388
EPS8_chr12_15615134_15794388	0/0	t0008	1434	2	1	1	0	0	0	copy fasta	EPS8	chr12	15615134	15794388
EPS8_chr12_15615134_15794388	0/0	t0009	1434	1	1	0	0	0	0	copy fasta	EPS8	chr12	15615134	15794388
EPS8_chr12_15615134_15794388	0/0	t0010	1433	1	0	0	1	0	0	copy fasta	EPS8	chr12	15615134	15794388
EPS8_chr12_15615134_15794388	1/0	t0011	1433	1	0	0	0	0	0	copy fasta	EPS8	chr12	15615134	15794388
EPS8_chr12_15615134_15794388	0/0	t0012	1433	1	1	0	0	0	0	copy fasta	EPS8	chr12	15615134	15794388
EPSTI1_chr13_42881388_42997241	0/0	t0001	2184	34	0	11	17	0	6	copy fasta	EPSTI1	chr13	42881388	42997241
EPSTI1_chr13_42881388_42997241	0/0	t0002	2191	29	12	0	12	1	4	copy fasta	EPSTI1	chr13	42881388	42997241
EPSTI1_chr13_42881388_42997241	0/0	t0003	2184	28	2	5	19	0	2	copy fasta	EPSTI1	chr13	42881388	42997241
EPSTI1_chr13_42881388_42997241	0/0	t0004	2183	27	0	9	11	3	4	copy fasta	EPSTI1	chr13	42881388	42997241
EPSTI1_chr13_42881388_42997241	0/0	t0005	2184	20	1	6	11	0	2	copy fasta	EPSTI1	chr13	42881388	42997241
EPSTI1_chr13_42881388_42997241	0/0	t0006	2187	20	16	2	0	1	1	copy fasta	EPSTI1	chr13	42881388	42997241
EPSTI1_chr13_42881388_42997241	0/0	t0007	2184	17	7	1	9	0	0	copy fasta	EPSTI1	chr13	42881388	42997241
EPSTI1_chr13_42881388_42997241	0/0	t0008	2186	14	2	6	4	1	1	copy fasta	EPSTI1	chr13	42881388	42997241
EPSTI1_chr13_42881388_42997241	0/0	t0009	2184	12	2	0	8	0	2	copy fasta	EPSTI1	chr13	42881388	42997241
EPSTI1_chr13_42881388_42997241	0/0	t0010	2184	12	0	0	10	0	2	copy fasta	EPSTI1	chr13	42881388	42997241
EPSTI1_chr13_42881388_42997241	0/0	t0011	2187	11	5	1	0	0	5	copy fasta	EPSTI1	chr13	42881388	42997241
EPSTI1_chr13_42881388_42997241	0/0	t0012	2186	11	4	1	6	0	0	copy fasta	EPSTI1	chr13	42881388	42997241
EPSTI1_chr13_42881388_42997241	0/0	t0013	2191	10	0	0	8	0	2	copy fasta	EPSTI1	chr13	42881388	42997241
EPSTI1_chr13_42881388_42997241	0/0	t0014	2189	9	1	0	8	0	0	copy fasta	EPSTI1	chr13	42881388	42997241
EPSTI1_chr13_42881388_42997241	0/0	t0015	2183	8	1	3	3	0	1	copy fasta	EPSTI1	chr13	42881388	42997241
EPSTI1_chr13_42881388_42997241	1/0	t0016	2183	8	7	0	0	0	0	copy fasta	EPSTI1	chr13	42881388	42997241
EPSTI1_chr13_42881388_42997241	0/0	t0017	2187	7	0	3	1	1	2	copy fasta	EPSTI1	chr13	42881388	42997241
EPSTI1_chr13_42881388_42997241	0/0	t0018	2189	6	2	0	2	0	2	copy fasta	EPSTI1	chr13	42881388	42997241
EPSTI1_chr13_42881388_42997241	0/1	t0019	2183	6	2	1	2	0	0	copy fasta	EPSTI1	chr13	42881388	42997241
EPSTI1_chr13_42881388_42997241	0/0	t0020	2184	5	0	1	0	1	3	copy fasta	EPSTI1	chr13	42881388	42997241
EPSTI1_chr13_42881388_42997241	0/0	t0021	2183	5	0	4	0	0	1	copy fasta	EPSTI1	chr13	42881388	42997241
EPSTI1_chr13_42881388_42997241	0/0	t0022	2183	5	3	2	0	0	0	copy fasta	EPSTI1	chr13	42881388	42997241
EPSTI1_chr13_42881388_42997241	0/0	t0023	2184	4	0	4	0	0	0	copy fasta	EPSTI1	chr13	42881388	42997241
EPSTI1_chr13_42881388_42997241	0/0	t0024	2187	4	0	4	0	0	0	copy fasta	EPSTI1	chr13	42881388	42997241
EPSTI1_chr13_42881388_42997241	0/0	t0025	2184	3	0	0	3	0	0	copy fasta	EPSTI1	chr13	42881388	42997241
EPSTI1_chr13_42881388_42997241	0/0	t0026	2183	2	0	2	0	0	0	copy fasta	EPSTI1	chr13	42881388	42997241
EPSTI1_chr13_42881388_42997241	0/0	t0027	2184	2	0	0	2	0	0	copy fasta	EPSTI1	chr13	42881388	42997241
EPSTI1_chr13_42881388_42997241	0/0	t0028	2183	2	2	0	0	0	0	copy fasta	EPSTI1	chr13	42881388	42997241
EPSTI1_chr13_42881388_42997241	0/0	t0029	2183	1	1	0	0	0	0	copy fasta	EPSTI1	chr13	42881388	42997241
EPSTI1_chr13_42881388_42997241	0/0	t0030	2183	1	0	0	1	0	0	copy fasta	EPSTI1	chr13	42881388	42997241
EPSTI1_chr13_42881388_42997241	0/0	t0031	2185	1	0	0	1	0	0	copy fasta	EPSTI1	chr13	42881388	42997241
EPSTI1_chr13_42881388_42997241	0/0	t0032	2186	1	1	0	0	0	0	copy fasta	EPSTI1	chr13	42881388	42997241
EPSTI1_chr13_42881388_42997241	0/0	t0033	2186	1	0	0	1	0	0	copy fasta	EPSTI1	chr13	42881388	42997241
EPSTI1_chr13_42881388_42997241	0/0	t0034	2183	1	0	1	0	0	0	copy fasta	EPSTI1	chr13	42881388	42997241
EPSTI1_chr13_42881388_42997241	0/0	t0035	2186	1	0	1	0	0	0	copy fasta	EPSTI1	chr13	42881388	42997241
EPSTI1_chr13_42881388_42997241	0/0	t0036	2185	1	0	0	1	0	0	copy fasta	EPSTI1	chr13	42881388	42997241
EPSTI1_chr13_42881388_42997241	0/0	t0037	2184	1	0	0	1	0	0	copy fasta	EPSTI1	chr13	42881388	42997241
EPSTI1_chr13_42881388_42997241	0/0	t0038	2187	1	0	1	0	0	0	copy fasta	EPSTI1	chr13	42881388	42997241
EPSTI1_chr13_42881388_42997241	0/0	t0039	2188	1	1	0	0	0	0	copy fasta	EPSTI1	chr13	42881388	42997241
EPSTI1_chr13_42881388_42997241	0/0	t0040	2192	1	0	0	1	0	0	copy fasta	EPSTI1	chr13	42881388	42997241
EPSTI1_chr13_42881388_42997241	0/0	t0041	2190	1	0	0	0	0	1	copy fasta	EPSTI1	chr13	42881388	42997241