JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ERBB3_chr12_56075165_56108505	1/0	t0005	1587	24	17	0	6	0	0	copy fasta	ERBB3	chr12	56075165	56108505
ERBB3_chr12_56075165_56108505	0/0	t0006	1590	12	12	0	0	0	0	copy fasta	ERBB3	chr12	56075165	56108505
ERBB3_chr12_56075165_56108505	0/0	t0007	1589	12	11	1	0	0	0	copy fasta	ERBB3	chr12	56075165	56108505
ERBB3_chr12_56075165_56108505	0/0	t0008	1584	8	0	0	8	0	0	copy fasta	ERBB3	chr12	56075165	56108505
ERBB3_chr12_56075165_56108505	0/0	t0009	1585	5	3	2	0	0	0	copy fasta	ERBB3	chr12	56075165	56108505
ERBB3_chr12_56075165_56108505	0/0	t0010	1591	3	3	0	0	0	0	copy fasta	ERBB3	chr12	56075165	56108505
ERBB3_chr12_56075165_56108505	0/0	t0011	1589	2	0	0	2	0	0	copy fasta	ERBB3	chr12	56075165	56108505
ERBB3_chr12_56075165_56108505	0/0	t0012	1587	2	0	0	2	0	0	copy fasta	ERBB3	chr12	56075165	56108505
ERBB3_chr12_56075165_56108505	0/0	t0013	1589	2	2	0	0	0	0	copy fasta	ERBB3	chr12	56075165	56108505
ERBB3_chr12_56075165_56108505	0/0	t0014	1588	1	0	0	1	0	0	copy fasta	ERBB3	chr12	56075165	56108505
ERBB3_chr12_56075165_56108505	0/0	t0015	1589	1	1	0	0	0	0	copy fasta	ERBB3	chr12	56075165	56108505
ERBB3_chr12_56075165_56108505	0/0	t0016	1587	1	1	0	0	0	0	copy fasta	ERBB3	chr12	56075165	56108505
ERBB3_chr12_56075165_56108505	0/0	t0017	1587	1	0	0	1	0	0	copy fasta	ERBB3	chr12	56075165	56108505
ERBB3_chr12_56075165_56108505	0/0	t0018	1590	1	0	1	0	0	0	copy fasta	ERBB3	chr12	56075165	56108505
ERBB3_chr12_56075165_56108505	0/0	t0019	1588	1	0	0	1	0	0	copy fasta	ERBB3	chr12	56075165	56108505
ERBB3_chr12_56075165_56108505	0/0	t0020	1588	1	0	0	1	0	0	copy fasta	ERBB3	chr12	56075165	56108505
ERBB3_chr12_56075165_56108505	0/0	t0021	1589	1	1	0	0	0	0	copy fasta	ERBB3	chr12	56075165	56108505
ERBB3_chr12_56075165_56108505	0/0	t0022	1577	1	0	0	0	0	1	copy fasta	ERBB3	chr12	56075165	56108505
ERBB4_chr2_211370717_212543802	0/0	t0001	8182	9	5	3	0	0	1	copy fasta	ERBB4	chr2	211370717	212543802
ERBB4_chr2_211370717_212543802	0/0	t0002	8182	5	3	1	0	0	1	copy fasta	ERBB4	chr2	211370717	212543802
ERBB4_chr2_211370717_212543802	0/0	t0003	8171	4	4	0	0	0	0	copy fasta	ERBB4	chr2	211370717	212543802
ERBB4_chr2_211370717_212543802	0/0	t0004	8169	4	4	0	0	0	0	copy fasta	ERBB4	chr2	211370717	212543802
ERBB4_chr2_211370717_212543802	0/0	t0005	8171	3	2	1	0	0	0	copy fasta	ERBB4	chr2	211370717	212543802
ERBB4_chr2_211370717_212543802	0/0	t0006	8182	2	2	0	0	0	0	copy fasta	ERBB4	chr2	211370717	212543802
ERBB4_chr2_211370717_212543802	0/0	t0007	8183	2	2	0	0	0	0	copy fasta	ERBB4	chr2	211370717	212543802
ERBB4_chr2_211370717_212543802	0/0	t0008	8182	2	0	2	0	0	0	copy fasta	ERBB4	chr2	211370717	212543802
ERBB4_chr2_211370717_212543802	0/0	t0009	8171	2	2	0	0	0	0	copy fasta	ERBB4	chr2	211370717	212543802
ERBB4_chr2_211370717_212543802	0/0	t0010	8169	2	1	1	0	0	0	copy fasta	ERBB4	chr2	211370717	212543802
ERBB4_chr2_211370717_212543802	0/0	t0011	8170	2	2	0	0	0	0	copy fasta	ERBB4	chr2	211370717	212543802
ERBB4_chr2_211370717_212543802	0/0	t0012	8170	1	1	0	0	0	0	copy fasta	ERBB4	chr2	211370717	212543802
ERBB4_chr2_211370717_212543802	0/0	t0013	8181	1	0	1	0	0	0	copy fasta	ERBB4	chr2	211370717	212543802
ERBB4_chr2_211370717_212543802	0/0	t0014	8181	1	1	0	0	0	0	copy fasta	ERBB4	chr2	211370717	212543802
ERBB4_chr2_211370717_212543802	0/0	t0015	8170	1	0	0	0	0	1	copy fasta	ERBB4	chr2	211370717	212543802
ERBB4_chr2_211370717_212543802	0/0	t0016	8182	1	1	0	0	0	0	copy fasta	ERBB4	chr2	211370717	212543802
ERBB4_chr2_211370717_212543802	0/0	t0017	8182	1	1	0	0	0	0	copy fasta	ERBB4	chr2	211370717	212543802
ERBB4_chr2_211370717_212543802	0/0	t0018	8182	1	0	0	0	0	1	copy fasta	ERBB4	chr2	211370717	212543802
ERBB4_chr2_211370717_212543802	0/0	t0019	8170	1	1	0	0	0	0	copy fasta	ERBB4	chr2	211370717	212543802
ERBB4_chr2_211370717_212543802	0/0	t0020	8169	1	1	0	0	0	0	copy fasta	ERBB4	chr2	211370717	212543802
ERBB4_chr2_211370717_212543802	0/0	t0021	8183	1	1	0	0	0	0	copy fasta	ERBB4	chr2	211370717	212543802
ERBB4_chr2_211370717_212543802	0/0	t0022	8170	1	1	0	0	0	0	copy fasta	ERBB4	chr2	211370717	212543802
ERBB4_chr2_211370717_212543802	0/0	t0023	8170	1	1	0	0	0	0	copy fasta	ERBB4	chr2	211370717	212543802
ERBB4_chr2_211370717_212543802	0/0	t0024	8171	1	1	0	0	0	0	copy fasta	ERBB4	chr2	211370717	212543802
ERBB4_chr2_211370717_212543802	0/0	t0025	8182	1	1	0	0	0	0	copy fasta	ERBB4	chr2	211370717	212543802
ERBB4_chr2_211370717_212543802	0/0	t0026	8183	1	1	0	0	0	0	copy fasta	ERBB4	chr2	211370717	212543802
ERBB4_chr2_211370717_212543802	0/0	t0027	8182	1	1	0	0	0	0	copy fasta	ERBB4	chr2	211370717	212543802
ERBB4_chr2_211370717_212543802	0/0	t0028	8171	1	1	0	0	0	0	copy fasta	ERBB4	chr2	211370717	212543802
ERBB4_chr2_211370717_212543802	0/0	t0029	8169	1	1	0	0	0	0	copy fasta	ERBB4	chr2	211370717	212543802
ERBB4_chr2_211370717_212543802	0/0	t0030	8170	1	0	1	0	0	0	copy fasta	ERBB4	chr2	211370717	212543802
ERBIN_chr5_65921575_66087546	1/1	t0001	4306	123	25	19	63	5	9	copy fasta	ERBIN	chr5	65921575	66087546
ERBIN_chr5_65921575_66087546	0/0	t0002	4306	64	11	9	39	1	4	copy fasta	ERBIN	chr5	65921575	66087546