JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ERBIN_chr5_65921575_66087546	0/0	t0003	4306	24	2	3	17	0	2	copy fasta	ERBIN	chr5	65921575	66087546
ERBIN_chr5_65921575_66087546	0/0	t0004	4306	15	14	1	0	0	0	copy fasta	ERBIN	chr5	65921575	66087546
ERBIN_chr5_65921575_66087546	0/0	t0005	4306	13	0	5	8	0	0	copy fasta	ERBIN	chr5	65921575	66087546
ERBIN_chr5_65921575_66087546	0/0	t0006	4306	11	10	1	0	0	0	copy fasta	ERBIN	chr5	65921575	66087546
ERBIN_chr5_65921575_66087546	0/0	t0007	4306	9	7	2	0	0	0	copy fasta	ERBIN	chr5	65921575	66087546
ERBIN_chr5_65921575_66087546	0/0	t0008	4306	8	0	0	8	0	0	copy fasta	ERBIN	chr5	65921575	66087546
ERBIN_chr5_65921575_66087546	0/0	t0009	4311	6	0	0	5	0	1	copy fasta	ERBIN	chr5	65921575	66087546
ERBIN_chr5_65921575_66087546	0/0	t0010	4306	6	6	0	0	0	0	copy fasta	ERBIN	chr5	65921575	66087546
ERBIN_chr5_65921575_66087546	0/0	t0011	4302	4	4	0	0	0	0	copy fasta	ERBIN	chr5	65921575	66087546
ERBIN_chr5_65921575_66087546	0/0	t0012	4307	3	3	0	0	0	0	copy fasta	ERBIN	chr5	65921575	66087546
ERBIN_chr5_65921575_66087546	0/0	t0013	4306	3	0	1	0	0	2	copy fasta	ERBIN	chr5	65921575	66087546
ERBIN_chr5_65921575_66087546	0/0	t0014	4306	2	0	0	2	0	0	copy fasta	ERBIN	chr5	65921575	66087546
ERBIN_chr5_65921575_66087546	0/0	t0015	4306	1	1	0	0	0	0	copy fasta	ERBIN	chr5	65921575	66087546
ERBIN_chr5_65921575_66087546	0/0	t0016	4306	1	1	0	0	0	0	copy fasta	ERBIN	chr5	65921575	66087546
ERBIN_chr5_65921575_66087546	0/0	t0017	4306	1	0	0	1	0	0	copy fasta	ERBIN	chr5	65921575	66087546
ERBIN_chr5_65921575_66087546	0/0	t0018	4306	1	0	0	1	0	0	copy fasta	ERBIN	chr5	65921575	66087546
ERBIN_chr5_65921575_66087546	0/0	t0019	4306	1	0	0	1	0	0	copy fasta	ERBIN	chr5	65921575	66087546
ERBIN_chr5_65921575_66087546	0/0	t0020	4306	1	1	0	0	0	0	copy fasta	ERBIN	chr5	65921575	66087546
ERBIN_chr5_65921575_66087546	0/0	t0021	4306	1	0	0	0	0	1	copy fasta	ERBIN	chr5	65921575	66087546
ERBIN_chr5_65921575_66087546	0/0	t0022	4306	1	1	0	0	0	0	copy fasta	ERBIN	chr5	65921575	66087546
ERBIN_chr5_65921575_66087546	0/0	t0023	4306	1	0	1	0	0	0	copy fasta	ERBIN	chr5	65921575	66087546
ERBIN_chr5_65921575_66087546	0/0	t0024	4306	1	0	1	0	0	0	copy fasta	ERBIN	chr5	65921575	66087546
ERBIN_chr5_65921575_66087546	0/0	t0025	4306	1	1	0	0	0	0	copy fasta	ERBIN	chr5	65921575	66087546
ERBIN_chr5_65921575_66087546	0/0	t0026	4306	1	0	0	0	0	1	copy fasta	ERBIN	chr5	65921575	66087546
ERBIN_chr5_65921575_66087546	0/0	t0027	4306	1	0	1	0	0	0	copy fasta	ERBIN	chr5	65921575	66087546
ERBIN_chr5_65921575_66087546	0/0	t0028	4306	1	1	0	0	0	0	copy fasta	ERBIN	chr5	65921575	66087546
ERBIN_chr5_65921575_66087546	0/0	t0029	4306	1	0	0	1	0	0	copy fasta	ERBIN	chr5	65921575	66087546
ERC1_chr12_986223_1500931	0/0	t0001	5976	4	4	0	0	0	0	copy fasta	ERC1	chr12	986223	1500931
ERC1_chr12_986223_1500931	0/0	t0002	5975	4	4	0	0	0	0	copy fasta	ERC1	chr12	986223	1500931
ERC1_chr12_986223_1500931	0/0	t0003	5958	3	0	3	0	0	0	copy fasta	ERC1	chr12	986223	1500931
ERC1_chr12_986223_1500931	0/0	t0004	5996	2	2	0	0	0	0	copy fasta	ERC1	chr12	986223	1500931
ERC1_chr12_986223_1500931	0/0	t0005	5977	2	2	0	0	0	0	copy fasta	ERC1	chr12	986223	1500931
ERC1_chr12_986223_1500931	0/0	t0006	5967	2	2	0	0	0	0	copy fasta	ERC1	chr12	986223	1500931
ERC1_chr12_986223_1500931	0/0	t0007	5973	2	0	0	0	2	0	copy fasta	ERC1	chr12	986223	1500931
ERC1_chr12_986223_1500931	0/0	t0008	5969	2	0	1	0	1	0	copy fasta	ERC1	chr12	986223	1500931
ERC1_chr12_986223_1500931	0/0	t0009	5970	2	0	2	0	0	0	copy fasta	ERC1	chr12	986223	1500931
ERC1_chr12_986223_1500931	0/0	t0010	5958	2	0	2	0	0	0	copy fasta	ERC1	chr12	986223	1500931
ERC1_chr12_986223_1500931	0/0	t0011	5958	2	0	0	1	0	1	copy fasta	ERC1	chr12	986223	1500931
ERC1_chr12_986223_1500931	0/0	t0012	5970	2	0	0	2	0	0	copy fasta	ERC1	chr12	986223	1500931
ERC1_chr12_986223_1500931	0/0	t0013	5968	2	0	0	0	0	2	copy fasta	ERC1	chr12	986223	1500931
ERC1_chr12_986223_1500931	0/1	t0014	5948	2	0	1	0	0	0	copy fasta	ERC1	chr12	986223	1500931
ERC1_chr12_986223_1500931	0/0	t0015	5974	2	0	0	0	1	1	copy fasta	ERC1	chr12	986223	1500931
ERC1_chr12_986223_1500931	0/0	t0016	5967	2	2	0	0	0	0	copy fasta	ERC1	chr12	986223	1500931
ERC1_chr12_986223_1500931	0/0	t0017	5984	1	1	0	0	0	0	copy fasta	ERC1	chr12	986223	1500931
ERC1_chr12_986223_1500931	0/0	t0018	5995	1	0	1	0	0	0	copy fasta	ERC1	chr12	986223	1500931
ERC1_chr12_986223_1500931	0/0	t0019	6003	1	1	0	0	0	0	copy fasta	ERC1	chr12	986223	1500931
ERC1_chr12_986223_1500931	0/0	t0020	6008	1	0	1	0	0	0	copy fasta	ERC1	chr12	986223	1500931
ERC1_chr12_986223_1500931	0/0	t0021	5999	1	1	0	0	0	0	copy fasta	ERC1	chr12	986223	1500931
ERC1_chr12_986223_1500931	0/0	t0022	5999	1	1	0	0	0	0	copy fasta	ERC1	chr12	986223	1500931
ERC1_chr12_986223_1500931	0/0	t0023	6002	1	0	0	1	0	0	copy fasta	ERC1	chr12	986223	1500931