JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FASN_chr17_82073338_82103236	0/0	t0004	934	11	4	1	6	0	0	copy fasta	FASN	chr17	82073338	82103236
FASN_chr17_82073338_82103236	0/0	t0005	929	7	0	4	1	0	2	copy fasta	FASN	chr17	82073338	82103236
FASN_chr17_82073338_82103236	0/0	t0006	934	5	5	0	0	0	0	copy fasta	FASN	chr17	82073338	82103236
FASN_chr17_82073338_82103236	0/0	t0007	929	4	0	3	0	1	0	copy fasta	FASN	chr17	82073338	82103236
FASN_chr17_82073338_82103236	0/0	t0008	929	4	0	1	1	2	0	copy fasta	FASN	chr17	82073338	82103236
FASN_chr17_82073338_82103236	0/0	t0009	934	3	1	1	1	0	0	copy fasta	FASN	chr17	82073338	82103236
FASN_chr17_82073338_82103236	0/0	t0010	929	2	0	1	1	0	0	copy fasta	FASN	chr17	82073338	82103236
FASN_chr17_82073338_82103236	0/0	t0011	929	1	0	0	1	0	0	copy fasta	FASN	chr17	82073338	82103236
FASN_chr17_82073338_82103236	0/0	t0012	929	1	0	0	1	0	0	copy fasta	FASN	chr17	82073338	82103236
FASN_chr17_82073338_82103236	0/0	t0013	929	1	1	0	0	0	0	copy fasta	FASN	chr17	82073338	82103236
FASN_chr17_82073338_82103236	0/0	t0014	929	1	0	0	0	0	1	copy fasta	FASN	chr17	82073338	82103236
FASN_chr17_82073338_82103236	0/0	t0015	929	1	0	0	1	0	0	copy fasta	FASN	chr17	82073338	82103236
FASN_chr17_82073338_82103236	0/0	t0016	929	1	1	0	0	0	0	copy fasta	FASN	chr17	82073338	82103236
FASN_chr17_82073338_82103236	0/0	t0017	929	1	0	0	0	1	0	copy fasta	FASN	chr17	82073338	82103236
FASN_chr17_82073338_82103236	0/0	t0018	929	1	1	0	0	0	0	copy fasta	FASN	chr17	82073338	82103236
FASN_chr17_82073338_82103236	0/0	t0019	929	1	1	0	0	0	0	copy fasta	FASN	chr17	82073338	82103236
FASTKD1_chr2_169523508_169578865	1/1	t0001	1657	304	82	54	124	11	31	copy fasta	FASTKD1	chr2	169523508	169578865
FASTKD1_chr2_169523508_169578865	0/0	t0002	1657	57	1	6	40	2	8	copy fasta	FASTKD1	chr2	169523508	169578865
FASTKD1_chr2_169523508_169578865	0/0	t0003	1657	11	0	0	10	0	1	copy fasta	FASTKD1	chr2	169523508	169578865
FASTKD1_chr2_169523508_169578865	0/0	t0004	1657	4	0	0	1	1	2	copy fasta	FASTKD1	chr2	169523508	169578865
FASTKD1_chr2_169523508_169578865	0/0	t0005	1657	4	4	0	0	0	0	copy fasta	FASTKD1	chr2	169523508	169578865
FASTKD1_chr2_169523508_169578865	0/0	t0006	1657	3	3	0	0	0	0	copy fasta	FASTKD1	chr2	169523508	169578865
FASTKD1_chr2_169523508_169578865	0/0	t0007	1657	2	0	0	0	0	2	copy fasta	FASTKD1	chr2	169523508	169578865
FASTKD1_chr2_169523508_169578865	0/0	t0008	1657	2	2	0	0	0	0	copy fasta	FASTKD1	chr2	169523508	169578865
FASTKD1_chr2_169523508_169578865	0/0	t0009	1657	1	1	0	0	0	0	copy fasta	FASTKD1	chr2	169523508	169578865
FASTKD1_chr2_169523508_169578865	0/0	t0010	1657	1	0	0	1	0	0	copy fasta	FASTKD1	chr2	169523508	169578865
FASTKD1_chr2_169523508_169578865	0/0	t0011	1657	1	0	0	1	0	0	copy fasta	FASTKD1	chr2	169523508	169578865
FASTKD1_chr2_169523508_169578865	0/0	t0012	1657	1	1	0	0	0	0	copy fasta	FASTKD1	chr2	169523508	169578865
FASTKD1_chr2_169523508_169578865	0/0	t0013	1657	1	0	0	1	0	0	copy fasta	FASTKD1	chr2	169523508	169578865
FASTKD2_chr2_206760606_206801189	0/1	t0001	4580	75	4	9	53	2	6	copy fasta	FASTKD2	chr2	206760606	206801189
FASTKD2_chr2_206760606_206801189	0/0	t0002	4581	35	0	1	28	0	6	copy fasta	FASTKD2	chr2	206760606	206801189
FASTKD2_chr2_206760606_206801189	1/0	t0003	4580	21	10	4	1	2	3	copy fasta	FASTKD2	chr2	206760606	206801189
FASTKD2_chr2_206760606_206801189	0/0	t0004	4568	19	4	8	3	4	0	copy fasta	FASTKD2	chr2	206760606	206801189
FASTKD2_chr2_206760606_206801189	0/0	t0005	4581	19	0	3	9	3	4	copy fasta	FASTKD2	chr2	206760606	206801189
FASTKD2_chr2_206760606_206801189	0/0	t0006	4568	17	0	12	1	1	3	copy fasta	FASTKD2	chr2	206760606	206801189
FASTKD2_chr2_206760606_206801189	0/0	t0007	4580	16	1	1	13	0	1	copy fasta	FASTKD2	chr2	206760606	206801189
FASTKD2_chr2_206760606_206801189	0/0	t0008	4582	13	0	1	10	0	2	copy fasta	FASTKD2	chr2	206760606	206801189
FASTKD2_chr2_206760606_206801189	0/0	t0009	4581	9	6	2	0	0	1	copy fasta	FASTKD2	chr2	206760606	206801189
FASTKD2_chr2_206760606_206801189	0/0	t0010	4581	8	0	0	8	0	0	copy fasta	FASTKD2	chr2	206760606	206801189
FASTKD2_chr2_206760606_206801189	0/0	t0011	4590	7	3	0	4	0	0	copy fasta	FASTKD2	chr2	206760606	206801189
FASTKD2_chr2_206760606_206801189	0/0	t0012	4589	7	0	0	7	0	0	copy fasta	FASTKD2	chr2	206760606	206801189
FASTKD2_chr2_206760606_206801189	0/0	t0013	4572	7	7	0	0	0	0	copy fasta	FASTKD2	chr2	206760606	206801189
FASTKD2_chr2_206760606_206801189	0/0	t0014	4580	6	0	0	4	0	2	copy fasta	FASTKD2	chr2	206760606	206801189
FASTKD2_chr2_206760606_206801189	0/0	t0015	4571	5	3	2	0	0	0	copy fasta	FASTKD2	chr2	206760606	206801189
FASTKD2_chr2_206760606_206801189	0/0	t0016	4581	5	1	1	3	0	0	copy fasta	FASTKD2	chr2	206760606	206801189
FASTKD2_chr2_206760606_206801189	0/0	t0017	4573	5	0	0	0	1	4	copy fasta	FASTKD2	chr2	206760606	206801189
FASTKD2_chr2_206760606_206801189	0/0	t0018	4579	4	0	0	3	1	0	copy fasta	FASTKD2	chr2	206760606	206801189
FASTKD2_chr2_206760606_206801189	0/0	t0019	4580	4	4	0	0	0	0	copy fasta	FASTKD2	chr2	206760606	206801189
FASTKD2_chr2_206760606_206801189	0/0	t0020	4580	3	0	3	0	0	0	copy fasta	FASTKD2	chr2	206760606	206801189
FASTKD2_chr2_206760606_206801189	0/0	t0021	4580	3	3	0	0	0	0	copy fasta	FASTKD2	chr2	206760606	206801189