JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FASTKD2_chr2_206760606_206801189	0/0	t0072	4590	1	1	0	0	0	0	copy fasta	FASTKD2	chr2	206760606	206801189
FASTKD2_chr2_206760606_206801189	0/0	t0073	4586	1	1	0	0	0	0	copy fasta	FASTKD2	chr2	206760606	206801189
FASTKD2_chr2_206760606_206801189	0/0	t0074	4589	1	0	1	0	0	0	copy fasta	FASTKD2	chr2	206760606	206801189
FASTKD2_chr2_206760606_206801189	0/0	t0075	4581	1	1	0	0	0	0	copy fasta	FASTKD2	chr2	206760606	206801189
FASTKD2_chr2_206760606_206801189	0/0	t0076	4584	1	1	0	0	0	0	copy fasta	FASTKD2	chr2	206760606	206801189
FASTKD2_chr2_206760606_206801189	0/0	t0077	4580	1	0	0	1	0	0	copy fasta	FASTKD2	chr2	206760606	206801189
FASTKD2_chr2_206760606_206801189	0/0	t0078	4579	1	0	0	0	1	0	copy fasta	FASTKD2	chr2	206760606	206801189
FASTKD2_chr2_206760606_206801189	0/0	t0079	4581	1	1	0	0	0	0	copy fasta	FASTKD2	chr2	206760606	206801189
FASTKD2_chr2_206760606_206801189	0/0	t0080	4581	1	1	0	0	0	0	copy fasta	FASTKD2	chr2	206760606	206801189
FASTKD2_chr2_206760606_206801189	0/0	t0081	4578	1	1	0	0	0	0	copy fasta	FASTKD2	chr2	206760606	206801189
FASTKD2_chr2_206760606_206801189	0/0	t0082	4575	1	1	0	0	0	0	copy fasta	FASTKD2	chr2	206760606	206801189
FASTKD2_chr2_206760606_206801189	0/0	t0083	4575	1	1	0	0	0	0	copy fasta	FASTKD2	chr2	206760606	206801189
FASTKD2_chr2_206760606_206801189	0/0	t0084	4570	1	0	0	1	0	0	copy fasta	FASTKD2	chr2	206760606	206801189
FASTKD2_chr2_206760606_206801189	0/0	t0085	4568	1	0	0	0	0	1	copy fasta	FASTKD2	chr2	206760606	206801189
FASTKD2_chr2_206760606_206801189	0/0	t0086	4569	1	0	0	1	0	0	copy fasta	FASTKD2	chr2	206760606	206801189
FASTKD2_chr2_206760606_206801189	0/0	t0087	4567	1	1	0	0	0	0	copy fasta	FASTKD2	chr2	206760606	206801189
FASTKD2_chr2_206760606_206801189	0/0	t0088	4565	1	0	1	0	0	0	copy fasta	FASTKD2	chr2	206760606	206801189
FASTKD2_chr2_206760606_206801189	0/0	t0089	4580	1	0	1	0	0	0	copy fasta	FASTKD2	chr2	206760606	206801189
FASTKD2_chr2_206760606_206801189	0/0	t0090	4581	1	1	0	0	0	0	copy fasta	FASTKD2	chr2	206760606	206801189
FASTKD2_chr2_206760606_206801189	0/0	t0091	4580	1	0	0	0	0	1	copy fasta	FASTKD2	chr2	206760606	206801189
FASTKD2_chr2_206760606_206801189	0/0	t0092	4583	1	1	0	0	0	0	copy fasta	FASTKD2	chr2	206760606	206801189
FASTKD2_chr2_206760606_206801189	0/0	t0093	4575	1	1	0	0	0	0	copy fasta	FASTKD2	chr2	206760606	206801189
FASTKD2_chr2_206760606_206801189	0/0	t0094	4581	1	1	0	0	0	0	copy fasta	FASTKD2	chr2	206760606	206801189
FASTKD2_chr2_206760606_206801189	0/0	t0095	4581	1	0	1	0	0	0	copy fasta	FASTKD2	chr2	206760606	206801189
FASTKD2_chr2_206760606_206801189	0/0	t0096	4579	1	0	1	0	0	0	copy fasta	FASTKD2	chr2	206760606	206801189
FASTKD2_chr2_206760606_206801189	0/0	t0097	4580	1	0	0	1	0	0	copy fasta	FASTKD2	chr2	206760606	206801189
FASTKD2_chr2_206760606_206801189	0/0	t0098	4568	1	0	0	1	0	0	copy fasta	FASTKD2	chr2	206760606	206801189
FASTKD2_chr2_206760606_206801189	0/0	t0099	4580	1	0	0	0	0	1	copy fasta	FASTKD2	chr2	206760606	206801189
FASTKD2_chr2_206760606_206801189	0/0	t0100	4580	1	0	1	0	0	0	copy fasta	FASTKD2	chr2	206760606	206801189
FASTKD3_chr5_7854159_7874031	1/1	t0001	443	223	20	29	135	7	30	copy fasta	FASTKD3	chr5	7854159	7874031
FASTKD3_chr5_7854159_7874031	0/0	t0002	443	97	36	21	34	1	5	copy fasta	FASTKD3	chr5	7854159	7874031
FASTKD3_chr5_7854159_7874031	0/0	t0003	443	85	18	13	52	0	2	copy fasta	FASTKD3	chr5	7854159	7874031
FASTKD3_chr5_7854159_7874031	0/0	t0004	443	55	18	14	4	8	11	copy fasta	FASTKD3	chr5	7854159	7874031
FASTKD3_chr5_7854159_7874031	0/0	t0005	443	1	0	0	1	0	0	copy fasta	FASTKD3	chr5	7854159	7874031
FASTKD3_chr5_7854159_7874031	0/0	t0006	443	1	0	1	0	0	0	copy fasta	FASTKD3	chr5	7854159	7874031
FASTKD5_chr20_3141519_3164865	1/1	t0001	548	406	89	80	174	14	47	copy fasta	FASTKD5	chr20	3141519	3164865
FASTKD5_chr20_3141519_3164865	0/0	t0002	548	4	4	0	0	0	0	copy fasta	FASTKD5	chr20	3141519	3164865
FASTKD5_chr20_3141519_3164865	0/0	t0003	548	2	1	0	0	0	1	copy fasta	FASTKD5	chr20	3141519	3164865
FASTKD5_chr20_3141519_3164865	0/0	t0004	548	1	0	0	1	0	0	copy fasta	FASTKD5	chr20	3141519	3164865
FASTKD5_chr20_3141519_3164865	0/0	t0005	548	1	0	0	1	0	0	copy fasta	FASTKD5	chr20	3141519	3164865
FASTK_chr7_151071624_151085809	0/1	t0001	145	294	85	47	131	7	23	copy fasta	FASTK	chr7	151071624	151085809
FASTK_chr7_151071624_151085809	1/0	t0002	145	121	10	18	67	11	14	copy fasta	FASTK	chr7	151071624	151085809
FASTK_chr7_151071624_151085809	0/0	t0003	145	4	1	0	0	0	3	copy fasta	FASTK	chr7	151071624	151085809
FASTK_chr7_151071624_151085809	0/0	t0004	145	1	0	1	0	0	0	copy fasta	FASTK	chr7	151071624	151085809
FAS_chr10_88985798_89022059	0/0	t0001	2689	127	17	22	64	5	19	copy fasta	FAS	chr10	88985798	89022059
FAS_chr10_88985798_89022059	0/0	t0002	2689	110	23	16	62	3	6	copy fasta	FAS	chr10	88985798	89022059
FAS_chr10_88985798_89022059	1/0	t0003	2689	69	24	19	11	2	12	copy fasta	FAS	chr10	88985798	89022059
FAS_chr10_88985798_89022059	0/1	t0004	2689	19	1	7	7	1	2	copy fasta	FAS	chr10	88985798	89022059
FAS_chr10_88985798_89022059	0/0	t0005	2689	11	0	2	2	4	3	copy fasta	FAS	chr10	88985798	89022059
FAS_chr10_88985798_89022059	0/0	t0006	2689	8	6	2	0	0	0	copy fasta	FAS	chr10	88985798	89022059