JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FBXL12_chr19_9805270_9824079	1/1	t0001	893	290	79	61	102	14	32	copy fasta	FBXL12	chr19	9805270	9824079
FBXL12_chr19_9805270_9824079	0/0	t0002	893	16	0	10	6	0	0	copy fasta	FBXL12	chr19	9805270	9824079
FBXL12_chr19_9805270_9824079	0/0	t0003	893	11	7	3	0	1	0	copy fasta	FBXL12	chr19	9805270	9824079
FBXL12_chr19_9805270_9824079	0/0	t0004	894	8	5	0	0	0	3	copy fasta	FBXL12	chr19	9805270	9824079
FBXL12_chr19_9805270_9824079	0/0	t0005	893	4	4	0	0	0	0	copy fasta	FBXL12	chr19	9805270	9824079
FBXL12_chr19_9805270_9824079	0/0	t0006	893	2	0	0	2	0	0	copy fasta	FBXL12	chr19	9805270	9824079
FBXL12_chr19_9805270_9824079	0/0	t0007	893	2	0	1	0	1	0	copy fasta	FBXL12	chr19	9805270	9824079
FBXL12_chr19_9805270_9824079	0/0	t0008	893	1	0	0	1	0	0	copy fasta	FBXL12	chr19	9805270	9824079
FBXL12_chr19_9805270_9824079	0/0	t0009	893	1	0	0	1	0	0	copy fasta	FBXL12	chr19	9805270	9824079
FBXL12_chr19_9805270_9824079	0/0	t0010	893	1	0	0	0	0	1	copy fasta	FBXL12	chr19	9805270	9824079
FBXL12_chr19_9805270_9824079	0/0	t0011	893	1	1	0	0	0	0	copy fasta	FBXL12	chr19	9805270	9824079
FBXL12_chr19_9805270_9824079	0/0	t0012	893	1	0	1	0	0	0	copy fasta	FBXL12	chr19	9805270	9824079
FBXL13_chr7_102806189_103079796	1/1	t0001	2180	271	51	45	132	10	31	copy fasta	FBXL13	chr7	102806189	103079796
FBXL13_chr7_102806189_103079796	0/0	t0002	2180	10	3	3	0	2	2	copy fasta	FBXL13	chr7	102806189	103079796
FBXL13_chr7_102806189_103079796	0/0	t0003	2180	6	6	0	0	0	0	copy fasta	FBXL13	chr7	102806189	103079796
FBXL13_chr7_102806189_103079796	0/0	t0004	2181	6	0	1	5	0	0	copy fasta	FBXL13	chr7	102806189	103079796
FBXL13_chr7_102806189_103079796	0/0	t0005	2179	5	4	1	0	0	0	copy fasta	FBXL13	chr7	102806189	103079796
FBXL13_chr7_102806189_103079796	0/0	t0006	2179	5	0	2	2	0	1	copy fasta	FBXL13	chr7	102806189	103079796
FBXL13_chr7_102806189_103079796	0/0	t0007	2180	3	2	1	0	0	0	copy fasta	FBXL13	chr7	102806189	103079796
FBXL13_chr7_102806189_103079796	0/0	t0008	2178	3	3	0	0	0	0	copy fasta	FBXL13	chr7	102806189	103079796
FBXL13_chr7_102806189_103079796	0/0	t0009	2180	3	3	0	0	0	0	copy fasta	FBXL13	chr7	102806189	103079796
FBXL13_chr7_102806189_103079796	0/0	t0010	2180	3	0	3	0	0	0	copy fasta	FBXL13	chr7	102806189	103079796
FBXL13_chr7_102806189_103079796	0/0	t0011	2180	2	2	0	0	0	0	copy fasta	FBXL13	chr7	102806189	103079796
FBXL13_chr7_102806189_103079796	0/0	t0012	2180	1	1	0	0	0	0	copy fasta	FBXL13	chr7	102806189	103079796
FBXL13_chr7_102806189_103079796	0/0	t0013	2180	1	0	0	0	0	1	copy fasta	FBXL13	chr7	102806189	103079796
FBXL13_chr7_102806189_103079796	0/0	t0014	2181	1	0	0	1	0	0	copy fasta	FBXL13	chr7	102806189	103079796
FBXL13_chr7_102806189_103079796	0/0	t0015	2181	1	1	0	0	0	0	copy fasta	FBXL13	chr7	102806189	103079796
FBXL13_chr7_102806189_103079796	0/0	t0016	2180	1	1	0	0	0	0	copy fasta	FBXL13	chr7	102806189	103079796
FBXL13_chr7_102806189_103079796	0/0	t0017	2180	1	1	0	0	0	0	copy fasta	FBXL13	chr7	102806189	103079796
FBXL13_chr7_102806189_103079796	0/0	t0018	2180	1	1	0	0	0	0	copy fasta	FBXL13	chr7	102806189	103079796
FBXL13_chr7_102806189_103079796	0/0	t0019	2180	1	0	0	0	0	1	copy fasta	FBXL13	chr7	102806189	103079796
FBXL13_chr7_102806189_103079796	0/0	t0020	2179	1	1	0	0	0	0	copy fasta	FBXL13	chr7	102806189	103079796
FBXL13_chr7_102806189_103079796	0/0	t0021	2180	1	1	0	0	0	0	copy fasta	FBXL13	chr7	102806189	103079796
FBXL13_chr7_102806189_103079796	0/0	t0022	2180	1	1	0	0	0	0	copy fasta	FBXL13	chr7	102806189	103079796
FBXL14_chr12_1560993_1599581	0/0	t0001	1274	146	36	21	60	7	22	copy fasta	FBXL14	chr12	1560993	1599581
FBXL14_chr12_1560993_1599581	1/1	t0002	1271	52	3	11	30	0	6	copy fasta	FBXL14	chr12	1560993	1599581
FBXL14_chr12_1560993_1599581	0/0	t0003	1274	36	12	11	6	2	5	copy fasta	FBXL14	chr12	1560993	1599581
FBXL14_chr12_1560993_1599581	0/0	t0004	1274	35	3	1	30	0	1	copy fasta	FBXL14	chr12	1560993	1599581
FBXL14_chr12_1560993_1599581	0/0	t0005	1268	31	24	5	0	1	1	copy fasta	FBXL14	chr12	1560993	1599581
FBXL14_chr12_1560993_1599581	0/0	t0006	1283	14	0	4	9	0	1	copy fasta	FBXL14	chr12	1560993	1599581
FBXL14_chr12_1560993_1599581	0/0	t0007	1274	14	0	6	0	5	3	copy fasta	FBXL14	chr12	1560993	1599581
FBXL14_chr12_1560993_1599581	0/0	t0008	1271	14	0	0	14	0	0	copy fasta	FBXL14	chr12	1560993	1599581
FBXL14_chr12_1560993_1599581	0/0	t0009	1271	13	1	6	5	0	1	copy fasta	FBXL14	chr12	1560993	1599581
FBXL14_chr12_1560993_1599581	0/0	t0010	1277	10	0	5	4	0	1	copy fasta	FBXL14	chr12	1560993	1599581
FBXL14_chr12_1560993_1599581	0/0	t0011	1270	7	0	0	7	0	0	copy fasta	FBXL14	chr12	1560993	1599581
FBXL14_chr12_1560993_1599581	0/0	t0012	1283	6	0	0	6	0	0	copy fasta	FBXL14	chr12	1560993	1599581
FBXL14_chr12_1560993_1599581	0/0	t0013	1268	5	4	1	0	0	0	copy fasta	FBXL14	chr12	1560993	1599581
FBXL14_chr12_1560993_1599581	0/0	t0014	1265	4	2	2	0	0	0	copy fasta	FBXL14	chr12	1560993	1599581
FBXL14_chr12_1560993_1599581	0/0	t0015	1277	3	3	0	0	0	0	copy fasta	FBXL14	chr12	1560993	1599581
FBXL14_chr12_1560993_1599581	0/0	t0016	1274	3	3	0	0	0	0	copy fasta	FBXL14	chr12	1560993	1599581