JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FBXL14_chr12_1560993_1599581	0/0	t0017	1270	2	0	0	2	0	0	copy fasta	FBXL14	chr12	1560993	1599581
FBXL14_chr12_1560993_1599581	0/0	t0018	1268	2	2	0	0	0	0	copy fasta	FBXL14	chr12	1560993	1599581
FBXL14_chr12_1560993_1599581	0/0	t0019	1268	2	2	0	0	0	0	copy fasta	FBXL14	chr12	1560993	1599581
FBXL14_chr12_1560993_1599581	0/0	t0020	1274	1	0	0	1	0	0	copy fasta	FBXL14	chr12	1560993	1599581
FBXL14_chr12_1560993_1599581	0/0	t0021	1271	1	0	0	1	0	0	copy fasta	FBXL14	chr12	1560993	1599581
FBXL14_chr12_1560993_1599581	0/0	t0022	1274	1	1	0	0	0	0	copy fasta	FBXL14	chr12	1560993	1599581
FBXL14_chr12_1560993_1599581	0/0	t0023	1295	1	0	0	0	1	0	copy fasta	FBXL14	chr12	1560993	1599581
FBXL14_chr12_1560993_1599581	0/0	t0024	1289	1	0	0	1	0	0	copy fasta	FBXL14	chr12	1560993	1599581
FBXL14_chr12_1560993_1599581	0/0	t0025	1286	1	0	0	1	0	0	copy fasta	FBXL14	chr12	1560993	1599581
FBXL14_chr12_1560993_1599581	0/0	t0026	1283	1	1	0	0	0	0	copy fasta	FBXL14	chr12	1560993	1599581
FBXL14_chr12_1560993_1599581	0/0	t0027	1283	1	0	0	1	0	0	copy fasta	FBXL14	chr12	1560993	1599581
FBXL14_chr12_1560993_1599581	0/0	t0028	1277	1	0	0	0	0	1	copy fasta	FBXL14	chr12	1560993	1599581
FBXL14_chr12_1560993_1599581	0/0	t0029	1274	1	1	0	0	0	0	copy fasta	FBXL14	chr12	1560993	1599581
FBXL14_chr12_1560993_1599581	0/0	t0030	1274	1	0	0	0	0	1	copy fasta	FBXL14	chr12	1560993	1599581
FBXL14_chr12_1560993_1599581	0/0	t0031	1274	1	0	0	0	0	1	copy fasta	FBXL14	chr12	1560993	1599581
FBXL14_chr12_1560993_1599581	0/0	t0032	1274	1	0	0	0	0	1	copy fasta	FBXL14	chr12	1560993	1599581
FBXL14_chr12_1560993_1599581	0/0	t0033	1271	1	0	1	0	0	0	copy fasta	FBXL14	chr12	1560993	1599581
FBXL14_chr12_1560993_1599581	0/0	t0034	1268	1	1	0	0	0	0	copy fasta	FBXL14	chr12	1560993	1599581
FBXL14_chr12_1560993_1599581	0/0	t0035	1265	1	1	0	0	0	0	copy fasta	FBXL14	chr12	1560993	1599581
FBXL14_chr12_1560993_1599581	0/0	t0036	1270	1	0	0	1	0	0	copy fasta	FBXL14	chr12	1560993	1599581
FBXL14_chr12_1560993_1599581	0/0	t0037	1274	1	0	0	1	0	0	copy fasta	FBXL14	chr12	1560993	1599581
FBXL14_chr12_1560993_1599581	0/0	t0038	1274	1	0	0	0	0	1	copy fasta	FBXL14	chr12	1560993	1599581
FBXL15_chr10_102415836_102428136	1/1	t0001	438	363	83	72	155	11	40	copy fasta	FBXL15	chr10	102415836	102428136
FBXL15_chr10_102415836_102428136	0/0	t0002	438	2	0	0	2	0	0	copy fasta	FBXL15	chr10	102415836	102428136
FBXL15_chr10_102415836_102428136	0/0	t0003	438	1	0	0	0	1	0	copy fasta	FBXL15	chr10	102415836	102428136
FBXL15_chr10_102415836_102428136	0/0	t0004	438	1	0	0	1	0	0	copy fasta	FBXL15	chr10	102415836	102428136
FBXL15_chr10_102415836_102428136	0/0	t0005	438	1	1	0	0	0	0	copy fasta	FBXL15	chr10	102415836	102428136
FBXL16_chr16_687500_710801	0/0	t0001	2081	139	14	12	87	3	23	copy fasta	FBXL16	chr16	687500	710801
FBXL16_chr16_687500_710801	1/1	t0002	2080	123	11	44	39	7	20	copy fasta	FBXL16	chr16	687500	710801
FBXL16_chr16_687500_710801	0/0	t0003	2081	50	43	7	0	0	0	copy fasta	FBXL16	chr16	687500	710801
FBXL16_chr16_687500_710801	0/0	t0004	2081	11	9	1	1	0	0	copy fasta	FBXL16	chr16	687500	710801
FBXL16_chr16_687500_710801	0/0	t0005	2081	11	0	8	3	0	0	copy fasta	FBXL16	chr16	687500	710801
FBXL16_chr16_687500_710801	0/0	t0006	2081	5	5	0	0	0	0	copy fasta	FBXL16	chr16	687500	710801
FBXL16_chr16_687500_710801	0/0	t0007	2080	4	4	0	0	0	0	copy fasta	FBXL16	chr16	687500	710801
FBXL16_chr16_687500_710801	0/0	t0008	2081	3	3	0	0	0	0	copy fasta	FBXL16	chr16	687500	710801
FBXL16_chr16_687500_710801	0/0	t0009	2081	3	3	0	0	0	0	copy fasta	FBXL16	chr16	687500	710801
FBXL16_chr16_687500_710801	0/0	t0010	2080	2	0	0	0	0	2	copy fasta	FBXL16	chr16	687500	710801
FBXL16_chr16_687500_710801	0/0	t0011	2080	2	0	0	0	0	2	copy fasta	FBXL16	chr16	687500	710801
FBXL16_chr16_687500_710801	0/0	t0012	2081	2	0	0	0	0	2	copy fasta	FBXL16	chr16	687500	710801
FBXL16_chr16_687500_710801	0/0	t0013	2085	2	0	0	2	0	0	copy fasta	FBXL16	chr16	687500	710801
FBXL16_chr16_687500_710801	0/0	t0014	2081	2	2	0	0	0	0	copy fasta	FBXL16	chr16	687500	710801
FBXL16_chr16_687500_710801	0/0	t0015	2081	1	0	1	0	0	0	copy fasta	FBXL16	chr16	687500	710801
FBXL16_chr16_687500_710801	0/0	t0016	2081	1	1	0	0	0	0	copy fasta	FBXL16	chr16	687500	710801
FBXL16_chr16_687500_710801	0/0	t0017	2081	1	0	0	1	0	0	copy fasta	FBXL16	chr16	687500	710801
FBXL16_chr16_687500_710801	0/0	t0018	2113	1	0	0	1	0	0	copy fasta	FBXL16	chr16	687500	710801
FBXL16_chr16_687500_710801	0/0	t0019	2080	1	0	0	0	0	1	copy fasta	FBXL16	chr16	687500	710801
FBXL16_chr16_687500_710801	0/0	t0020	2080	1	0	1	0	0	0	copy fasta	FBXL16	chr16	687500	710801
FBXL16_chr16_687500_710801	0/0	t0021	2080	1	0	0	1	0	0	copy fasta	FBXL16	chr16	687500	710801
FBXL16_chr16_687500_710801	0/0	t0022	2081	1	1	0	0	0	0	copy fasta	FBXL16	chr16	687500	710801
FBXL16_chr16_687500_710801	0/0	t0023	2081	1	0	1	0	0	0	copy fasta	FBXL16	chr16	687500	710801