JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FBXL17_chr5_107854035_108387098	0/0	t0047	3093	1	0	0	1	0	0	copy fasta	FBXL17	chr5	107854035	108387098
FBXL17_chr5_107854035_108387098	0/0	t0048	3091	1	0	0	1	0	0	copy fasta	FBXL17	chr5	107854035	108387098
FBXL17_chr5_107854035_108387098	0/0	t0049	3096	1	0	0	0	0	1	copy fasta	FBXL17	chr5	107854035	108387098
FBXL17_chr5_107854035_108387098	0/0	t0050	3092	1	1	0	0	0	0	copy fasta	FBXL17	chr5	107854035	108387098
FBXL17_chr5_107854035_108387098	0/0	t0051	3093	1	0	1	0	0	0	copy fasta	FBXL17	chr5	107854035	108387098
FBXL17_chr5_107854035_108387098	0/0	t0052	3093	1	1	0	0	0	0	copy fasta	FBXL17	chr5	107854035	108387098
FBXL17_chr5_107854035_108387098	0/0	t0053	3093	1	0	0	1	0	0	copy fasta	FBXL17	chr5	107854035	108387098
FBXL17_chr5_107854035_108387098	0/0	t0054	3093	1	0	0	1	0	0	copy fasta	FBXL17	chr5	107854035	108387098
FBXL17_chr5_107854035_108387098	0/0	t0055	3092	1	1	0	0	0	0	copy fasta	FBXL17	chr5	107854035	108387098
FBXL17_chr5_107854035_108387098	0/0	t0056	3090	1	0	1	0	0	0	copy fasta	FBXL17	chr5	107854035	108387098
FBXL17_chr5_107854035_108387098	0/0	t0057	3089	1	0	0	1	0	0	copy fasta	FBXL17	chr5	107854035	108387098
FBXL17_chr5_107854035_108387098	0/0	t0058	3090	1	1	0	0	0	0	copy fasta	FBXL17	chr5	107854035	108387098
FBXL17_chr5_107854035_108387098	0/0	t0059	3090	1	1	0	0	0	0	copy fasta	FBXL17	chr5	107854035	108387098
FBXL17_chr5_107854035_108387098	0/0	t0060	3095	1	0	0	0	0	1	copy fasta	FBXL17	chr5	107854035	108387098
FBXL17_chr5_107854035_108387098	0/0	t0061	3092	1	1	0	0	0	0	copy fasta	FBXL17	chr5	107854035	108387098
FBXL17_chr5_107854035_108387098	0/0	t0062	3091	1	1	0	0	0	0	copy fasta	FBXL17	chr5	107854035	108387098
FBXL17_chr5_107854035_108387098	0/0	t0063	3092	1	0	1	0	0	0	copy fasta	FBXL17	chr5	107854035	108387098
FBXL17_chr5_107854035_108387098	0/0	t0064	3089	1	1	0	0	0	0	copy fasta	FBXL17	chr5	107854035	108387098
FBXL17_chr5_107854035_108387098	0/0	t0065	3093	1	1	0	0	0	0	copy fasta	FBXL17	chr5	107854035	108387098
FBXL18_chr7_5470797_5518809	0/0	t0001	6101	59	7	13	24	4	11	copy fasta	FBXL18	chr7	5470797	5518809
FBXL18_chr7_5470797_5518809	0/1	t0002	6102	17	0	4	11	0	1	copy fasta	FBXL18	chr7	5470797	5518809
FBXL18_chr7_5470797_5518809	0/0	t0003	6102	16	2	9	2	1	2	copy fasta	FBXL18	chr7	5470797	5518809
FBXL18_chr7_5470797_5518809	0/0	t0004	6101	13	1	3	7	1	1	copy fasta	FBXL18	chr7	5470797	5518809
FBXL18_chr7_5470797_5518809	0/0	t0005	6100	12	6	0	6	0	0	copy fasta	FBXL18	chr7	5470797	5518809
FBXL18_chr7_5470797_5518809	0/0	t0006	6101	9	2	1	2	0	4	copy fasta	FBXL18	chr7	5470797	5518809
FBXL18_chr7_5470797_5518809	0/0	t0007	6100	9	0	7	0	1	1	copy fasta	FBXL18	chr7	5470797	5518809
FBXL18_chr7_5470797_5518809	0/0	t0008	6101	9	2	3	4	0	0	copy fasta	FBXL18	chr7	5470797	5518809
FBXL18_chr7_5470797_5518809	0/0	t0009	6101	9	2	3	3	1	0	copy fasta	FBXL18	chr7	5470797	5518809
FBXL18_chr7_5470797_5518809	1/0	t0010	6114	8	0	1	2	0	4	copy fasta	FBXL18	chr7	5470797	5518809
FBXL18_chr7_5470797_5518809	0/0	t0011	6102	8	0	0	8	0	0	copy fasta	FBXL18	chr7	5470797	5518809
FBXL18_chr7_5470797_5518809	0/0	t0012	6101	8	0	0	8	0	0	copy fasta	FBXL18	chr7	5470797	5518809
FBXL18_chr7_5470797_5518809	0/0	t0013	6101	6	6	0	0	0	0	copy fasta	FBXL18	chr7	5470797	5518809
FBXL18_chr7_5470797_5518809	0/0	t0014	6100	5	0	1	1	1	2	copy fasta	FBXL18	chr7	5470797	5518809
FBXL18_chr7_5470797_5518809	0/0	t0015	6102	4	1	0	2	0	1	copy fasta	FBXL18	chr7	5470797	5518809
FBXL18_chr7_5470797_5518809	0/0	t0016	6100	4	2	0	2	0	0	copy fasta	FBXL18	chr7	5470797	5518809
FBXL18_chr7_5470797_5518809	0/0	t0017	6114	4	4	0	0	0	0	copy fasta	FBXL18	chr7	5470797	5518809
FBXL18_chr7_5470797_5518809	0/0	t0018	6114	3	0	0	1	0	2	copy fasta	FBXL18	chr7	5470797	5518809
FBXL18_chr7_5470797_5518809	0/0	t0019	6101	3	3	0	0	0	0	copy fasta	FBXL18	chr7	5470797	5518809
FBXL18_chr7_5470797_5518809	0/0	t0020	6101	3	2	0	0	0	1	copy fasta	FBXL18	chr7	5470797	5518809
FBXL18_chr7_5470797_5518809	0/0	t0021	6101	3	0	2	1	0	0	copy fasta	FBXL18	chr7	5470797	5518809
FBXL18_chr7_5470797_5518809	0/0	t0022	6101	3	0	0	3	0	0	copy fasta	FBXL18	chr7	5470797	5518809
FBXL18_chr7_5470797_5518809	0/0	t0023	6101	3	0	0	3	0	0	copy fasta	FBXL18	chr7	5470797	5518809
FBXL18_chr7_5470797_5518809	0/0	t0024	6116	3	3	0	0	0	0	copy fasta	FBXL18	chr7	5470797	5518809
FBXL18_chr7_5470797_5518809	0/0	t0025	6113	2	0	1	0	0	1	copy fasta	FBXL18	chr7	5470797	5518809
FBXL18_chr7_5470797_5518809	0/0	t0026	6113	2	0	0	0	1	1	copy fasta	FBXL18	chr7	5470797	5518809
FBXL18_chr7_5470797_5518809	0/0	t0027	6110	2	2	0	0	0	0	copy fasta	FBXL18	chr7	5470797	5518809
FBXL18_chr7_5470797_5518809	0/0	t0028	6114	2	0	1	0	1	0	copy fasta	FBXL18	chr7	5470797	5518809
FBXL18_chr7_5470797_5518809	0/0	t0029	6114	2	2	0	0	0	0	copy fasta	FBXL18	chr7	5470797	5518809
FBXL18_chr7_5470797_5518809	0/0	t0030	6114	2	2	0	0	0	0	copy fasta	FBXL18	chr7	5470797	5518809
FBXL18_chr7_5470797_5518809	0/0	t0031	6103	2	0	0	2	0	0	copy fasta	FBXL18	chr7	5470797	5518809