JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FBXL18_chr7_5470797_5518809	0/0	t0082	6101	1	0	1	0	0	0	copy fasta	FBXL18	chr7	5470797	5518809
FBXL18_chr7_5470797_5518809	0/0	t0083	6099	1	0	1	0	0	0	copy fasta	FBXL18	chr7	5470797	5518809
FBXL18_chr7_5470797_5518809	0/0	t0084	6100	1	0	1	0	0	0	copy fasta	FBXL18	chr7	5470797	5518809
FBXL18_chr7_5470797_5518809	0/0	t0085	6101	1	0	0	1	0	0	copy fasta	FBXL18	chr7	5470797	5518809
FBXL18_chr7_5470797_5518809	0/0	t0086	6099	1	0	1	0	0	0	copy fasta	FBXL18	chr7	5470797	5518809
FBXL18_chr7_5470797_5518809	0/0	t0087	6102	1	0	1	0	0	0	copy fasta	FBXL18	chr7	5470797	5518809
FBXL18_chr7_5470797_5518809	0/0	t0088	6101	1	1	0	0	0	0	copy fasta	FBXL18	chr7	5470797	5518809
FBXL18_chr7_5470797_5518809	0/0	t0089	6103	1	0	0	0	0	1	copy fasta	FBXL18	chr7	5470797	5518809
FBXL18_chr7_5470797_5518809	0/0	t0090	6110	1	1	0	0	0	0	copy fasta	FBXL18	chr7	5470797	5518809
FBXL18_chr7_5470797_5518809	0/0	t0091	6134	1	0	1	0	0	0	copy fasta	FBXL18	chr7	5470797	5518809
FBXL18_chr7_5470797_5518809	0/0	t0092	6101	1	0	0	0	0	1	copy fasta	FBXL18	chr7	5470797	5518809
FBXL18_chr7_5470797_5518809	0/0	t0093	6102	1	0	0	1	0	0	copy fasta	FBXL18	chr7	5470797	5518809
FBXL18_chr7_5470797_5518809	0/0	t0094	6102	1	1	0	0	0	0	copy fasta	FBXL18	chr7	5470797	5518809
FBXL18_chr7_5470797_5518809	0/0	t0095	6100	1	0	0	0	1	0	copy fasta	FBXL18	chr7	5470797	5518809
FBXL18_chr7_5470797_5518809	0/0	t0096	6103	1	0	1	0	0	0	copy fasta	FBXL18	chr7	5470797	5518809
FBXL18_chr7_5470797_5518809	0/0	t0097	6101	1	1	0	0	0	0	copy fasta	FBXL18	chr7	5470797	5518809
FBXL18_chr7_5470797_5518809	0/0	t0098	6101	1	0	0	1	0	0	copy fasta	FBXL18	chr7	5470797	5518809
FBXL18_chr7_5470797_5518809	0/0	t0099	6101	1	0	0	1	0	0	copy fasta	FBXL18	chr7	5470797	5518809
FBXL18_chr7_5470797_5518809	0/0	t0100	6101	1	1	0	0	0	0	copy fasta	FBXL18	chr7	5470797	5518809
FBXL18_chr7_5470797_5518809	0/0	t0101	6104	1	0	0	1	0	0	copy fasta	FBXL18	chr7	5470797	5518809
FBXL18_chr7_5470797_5518809	0/0	t0102	6104	1	1	0	0	0	0	copy fasta	FBXL18	chr7	5470797	5518809
FBXL18_chr7_5470797_5518809	0/0	t0103	6102	1	1	0	0	0	0	copy fasta	FBXL18	chr7	5470797	5518809
FBXL18_chr7_5470797_5518809	0/0	t0104	6102	1	1	0	0	0	0	copy fasta	FBXL18	chr7	5470797	5518809
FBXL18_chr7_5470797_5518809	0/0	t0105	6101	1	0	1	0	0	0	copy fasta	FBXL18	chr7	5470797	5518809
FBXL18_chr7_5470797_5518809	0/0	t0106	6099	1	1	0	0	0	0	copy fasta	FBXL18	chr7	5470797	5518809
FBXL18_chr7_5470797_5518809	0/0	t0107	6103	1	1	0	0	0	0	copy fasta	FBXL18	chr7	5470797	5518809
FBXL18_chr7_5470797_5518809	0/0	t0108	6100	1	1	0	0	0	0	copy fasta	FBXL18	chr7	5470797	5518809
FBXL18_chr7_5470797_5518809	0/0	t0109	6119	1	1	0	0	0	0	copy fasta	FBXL18	chr7	5470797	5518809
FBXL18_chr7_5470797_5518809	0/0	t0110	6122	1	1	0	0	0	0	copy fasta	FBXL18	chr7	5470797	5518809
FBXL18_chr7_5470797_5518809	0/0	t0111	6113	1	1	0	0	0	0	copy fasta	FBXL18	chr7	5470797	5518809
FBXL18_chr7_5470797_5518809	0/0	t0112	6101	1	0	0	1	0	0	copy fasta	FBXL18	chr7	5470797	5518809
FBXL18_chr7_5470797_5518809	0/0	t0113	6110	1	1	0	0	0	0	copy fasta	FBXL18	chr7	5470797	5518809
FBXL18_chr7_5470797_5518809	0/0	t0114	6111	1	1	0	0	0	0	copy fasta	FBXL18	chr7	5470797	5518809
FBXL18_chr7_5470797_5518809	0/0	t0115	6103	1	1	0	0	0	0	copy fasta	FBXL18	chr7	5470797	5518809
FBXL18_chr7_5470797_5518809	0/0	t0116	6101	1	1	0	0	0	0	copy fasta	FBXL18	chr7	5470797	5518809
FBXL18_chr7_5470797_5518809	0/0	t0117	6103	1	1	0	0	0	0	copy fasta	FBXL18	chr7	5470797	5518809
FBXL18_chr7_5470797_5518809	0/0	t0118	6115	1	1	0	0	0	0	copy fasta	FBXL18	chr7	5470797	5518809
FBXL18_chr7_5470797_5518809	0/0	t0119	6113	1	1	0	0	0	0	copy fasta	FBXL18	chr7	5470797	5518809
FBXL18_chr7_5470797_5518809	0/0	t0120	6114	1	1	0	0	0	0	copy fasta	FBXL18	chr7	5470797	5518809
FBXL18_chr7_5470797_5518809	0/0	t0121	6100	1	0	1	0	0	0	copy fasta	FBXL18	chr7	5470797	5518809
FBXL18_chr7_5470797_5518809	0/0	t0122	6100	1	0	0	0	0	1	copy fasta	FBXL18	chr7	5470797	5518809
FBXL19_chr16_30918572_30953783	1/1	t0001	2466	169	63	36	38	11	19	copy fasta	FBXL19	chr16	30918572	30953783
FBXL19_chr16_30918572_30953783	0/0	t0002	2467	19	6	9	4	0	0	copy fasta	FBXL19	chr16	30918572	30953783
FBXL19_chr16_30918572_30953783	0/0	t0003	2467	11	0	6	3	0	2	copy fasta	FBXL19	chr16	30918572	30953783
FBXL19_chr16_30918572_30953783	0/0	t0004	2468	6	2	2	1	0	1	copy fasta	FBXL19	chr16	30918572	30953783
FBXL19_chr16_30918572_30953783	0/0	t0005	2467	4	0	2	2	0	0	copy fasta	FBXL19	chr16	30918572	30953783
FBXL19_chr16_30918572_30953783	0/0	t0006	2469	3	1	1	0	0	1	copy fasta	FBXL19	chr16	30918572	30953783
FBXL19_chr16_30918572_30953783	0/0	t0007	2466	3	0	3	0	0	0	copy fasta	FBXL19	chr16	30918572	30953783
FBXL19_chr16_30918572_30953783	0/0	t0008	2468	3	2	1	0	0	0	copy fasta	FBXL19	chr16	30918572	30953783
FBXL19_chr16_30918572_30953783	0/0	t0009	2469	2	0	0	0	1	1	copy fasta	FBXL19	chr16	30918572	30953783