JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
AKAP11_chr13_42267152_42328261	0/0	t0047	4216	1	0	1	0	0	0	copy fasta	AKAP11	chr13	42267152	42328261
AKAP11_chr13_42267152_42328261	0/0	t0048	4218	1	0	0	0	0	1	copy fasta	AKAP11	chr13	42267152	42328261
AKAP11_chr13_42267152_42328261	0/0	t0049	4220	1	1	0	0	0	0	copy fasta	AKAP11	chr13	42267152	42328261
AKAP11_chr13_42267152_42328261	0/0	t0050	4222	1	0	0	0	0	1	copy fasta	AKAP11	chr13	42267152	42328261
AKAP11_chr13_42267152_42328261	0/0	t0051	4196	1	0	0	1	0	0	copy fasta	AKAP11	chr13	42267152	42328261
AKAP11_chr13_42267152_42328261	0/0	t0052	4208	1	0	1	0	0	0	copy fasta	AKAP11	chr13	42267152	42328261
AKAP11_chr13_42267152_42328261	0/0	t0053	4208	1	0	1	0	0	0	copy fasta	AKAP11	chr13	42267152	42328261
AKAP11_chr13_42267152_42328261	0/0	t0054	4204	1	0	0	1	0	0	copy fasta	AKAP11	chr13	42267152	42328261
AKAP11_chr13_42267152_42328261	0/0	t0055	4214	1	1	0	0	0	0	copy fasta	AKAP11	chr13	42267152	42328261
AKAP11_chr13_42267152_42328261	0/0	t0056	4206	1	0	0	0	0	1	copy fasta	AKAP11	chr13	42267152	42328261
AKAP11_chr13_42267152_42328261	0/0	t0057	4216	1	1	0	0	0	0	copy fasta	AKAP11	chr13	42267152	42328261
AKAP11_chr13_42267152_42328261	0/0	t0058	4218	1	1	0	0	0	0	copy fasta	AKAP11	chr13	42267152	42328261
AKAP11_chr13_42267152_42328261	0/0	t0059	4218	1	1	0	0	0	0	copy fasta	AKAP11	chr13	42267152	42328261
AKAP11_chr13_42267152_42328261	0/0	t0060	4210	1	0	1	0	0	0	copy fasta	AKAP11	chr13	42267152	42328261
AKAP11_chr13_42267152_42328261	0/0	t0061	4212	1	0	1	0	0	0	copy fasta	AKAP11	chr13	42267152	42328261
AKAP11_chr13_42267152_42328261	0/0	t0062	4222	1	1	0	0	0	0	copy fasta	AKAP11	chr13	42267152	42328261
AKAP11_chr13_42267152_42328261	0/0	t0063	4228	1	0	0	0	0	1	copy fasta	AKAP11	chr13	42267152	42328261
AKAP11_chr13_42267152_42328261	0/0	t0064	4220	1	0	0	1	0	0	copy fasta	AKAP11	chr13	42267152	42328261
AKAP11_chr13_42267152_42328261	0/0	t0065	4222	1	0	0	1	0	0	copy fasta	AKAP11	chr13	42267152	42328261
AKAP11_chr13_42267152_42328261	0/0	t0066	4222	1	0	0	1	0	0	copy fasta	AKAP11	chr13	42267152	42328261
AKAP11_chr13_42267152_42328261	0/0	t0067	4232	1	1	0	0	0	0	copy fasta	AKAP11	chr13	42267152	42328261
AKAP11_chr13_42267152_42328261	0/0	t0068	4224	1	0	0	1	0	0	copy fasta	AKAP11	chr13	42267152	42328261
AKAP11_chr13_42267152_42328261	0/0	t0069	4234	1	1	0	0	0	0	copy fasta	AKAP11	chr13	42267152	42328261
AKAP11_chr13_42267152_42328261	0/0	t0070	4226	1	0	0	1	0	0	copy fasta	AKAP11	chr13	42267152	42328261
AKAP11_chr13_42267152_42328261	0/0	t0071	4224	1	0	0	0	0	1	copy fasta	AKAP11	chr13	42267152	42328261
AKAP11_chr13_42267152_42328261	0/0	t0072	4212	1	1	0	0	0	0	copy fasta	AKAP11	chr13	42267152	42328261
AKAP11_chr13_42267152_42328261	0/0	t0073	4214	1	1	0	0	0	0	copy fasta	AKAP11	chr13	42267152	42328261
AKAP11_chr13_42267152_42328261	0/0	t0074	4194	1	1	0	0	0	0	copy fasta	AKAP11	chr13	42267152	42328261
AKAP11_chr13_42267152_42328261	0/0	t0075	4204	1	0	0	0	0	1	copy fasta	AKAP11	chr13	42267152	42328261
AKAP11_chr13_42267152_42328261	0/0	t0076	4206	1	0	0	0	0	1	copy fasta	AKAP11	chr13	42267152	42328261
AKAP11_chr13_42267152_42328261	0/0	t0077	4210	1	1	0	0	0	0	copy fasta	AKAP11	chr13	42267152	42328261
AKAP11_chr13_42267152_42328261	0/0	t0078	4210	1	0	0	0	0	1	copy fasta	AKAP11	chr13	42267152	42328261
AKAP11_chr13_42267152_42328261	0/0	t0079	4214	1	1	0	0	0	0	copy fasta	AKAP11	chr13	42267152	42328261
AKAP11_chr13_42267152_42328261	0/0	t0080	4214	1	1	0	0	0	0	copy fasta	AKAP11	chr13	42267152	42328261
AKAP11_chr13_42267152_42328261	0/0	t0081	4214	1	1	0	0	0	0	copy fasta	AKAP11	chr13	42267152	42328261
AKAP11_chr13_42267152_42328261	0/0	t0082	4216	1	0	0	0	0	1	copy fasta	AKAP11	chr13	42267152	42328261
AKAP11_chr13_42267152_42328261	0/0	t0083	4220	1	0	0	0	1	0	copy fasta	AKAP11	chr13	42267152	42328261
AKAP11_chr13_42267152_42328261	0/0	t0084	4222	1	1	0	0	0	0	copy fasta	AKAP11	chr13	42267152	42328261
AKAP11_chr13_42267152_42328261	0/0	t0085	4222	1	0	1	0	0	0	copy fasta	AKAP11	chr13	42267152	42328261
AKAP11_chr13_42267152_42328261	0/0	t0086	4224	1	1	0	0	0	0	copy fasta	AKAP11	chr13	42267152	42328261
AKAP11_chr13_42267152_42328261	0/0	t0087	4226	1	0	1	0	0	0	copy fasta	AKAP11	chr13	42267152	42328261
AKAP11_chr13_42267152_42328261	0/0	t0088	4206	1	0	0	0	0	1	copy fasta	AKAP11	chr13	42267152	42328261
AKAP11_chr13_42267152_42328261	0/0	t0089	4208	1	1	0	0	0	0	copy fasta	AKAP11	chr13	42267152	42328261
AKAP11_chr13_42267152_42328261	0/0	t0090	4210	1	1	0	0	0	0	copy fasta	AKAP11	chr13	42267152	42328261
AKAP11_chr13_42267152_42328261	0/0	t0091	4222	1	0	0	1	0	0	copy fasta	AKAP11	chr13	42267152	42328261
AKAP11_chr13_42267152_42328261	0/0	t0092	4212	1	0	0	1	0	0	copy fasta	AKAP11	chr13	42267152	42328261
AKAP11_chr13_42267152_42328261	0/0	t0093	4218	1	0	1	0	0	0	copy fasta	AKAP11	chr13	42267152	42328261
AKAP11_chr13_42267152_42328261	0/0	t0094	4214	1	1	0	0	0	0	copy fasta	AKAP11	chr13	42267152	42328261
AKAP11_chr13_42267152_42328261	0/0	t0095	4216	1	1	0	0	0	0	copy fasta	AKAP11	chr13	42267152	42328261
AKAP11_chr13_42267152_42328261	0/0	t0096	4218	1	1	0	0	0	0	copy fasta	AKAP11	chr13	42267152	42328261