JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FBXO22_chr15_75898878_75947511	0/0	t0102	9488	1	1	0	0	0	0	copy fasta	FBXO22	chr15	75898878	75947511
FBXO22_chr15_75898878_75947511	0/0	t0103	9483	1	0	0	1	0	0	copy fasta	FBXO22	chr15	75898878	75947511
FBXO22_chr15_75898878_75947511	0/0	t0104	9498	1	1	0	0	0	0	copy fasta	FBXO22	chr15	75898878	75947511
FBXO22_chr15_75898878_75947511	0/0	t0105	9497	1	1	0	0	0	0	copy fasta	FBXO22	chr15	75898878	75947511
FBXO22_chr15_75898878_75947511	0/0	t0106	9498	1	1	0	0	0	0	copy fasta	FBXO22	chr15	75898878	75947511
FBXO22_chr15_75898878_75947511	0/0	t0107	9498	1	1	0	0	0	0	copy fasta	FBXO22	chr15	75898878	75947511
FBXO22_chr15_75898878_75947511	0/0	t0108	9497	1	1	0	0	0	0	copy fasta	FBXO22	chr15	75898878	75947511
FBXO22_chr15_75898878_75947511	0/0	t0109	9498	1	1	0	0	0	0	copy fasta	FBXO22	chr15	75898878	75947511
FBXO22_chr15_75898878_75947511	0/0	t0110	9480	1	0	0	1	0	0	copy fasta	FBXO22	chr15	75898878	75947511
FBXO22_chr15_75898878_75947511	0/0	t0111	9486	1	1	0	0	0	0	copy fasta	FBXO22	chr15	75898878	75947511
FBXO22_chr15_75898878_75947511	0/0	t0112	9486	1	0	1	0	0	0	copy fasta	FBXO22	chr15	75898878	75947511
FBXO22_chr15_75898878_75947511	0/0	t0113	9484	1	0	0	1	0	0	copy fasta	FBXO22	chr15	75898878	75947511
FBXO22_chr15_75898878_75947511	0/0	t0114	9483	1	0	0	1	0	0	copy fasta	FBXO22	chr15	75898878	75947511
FBXO22_chr15_75898878_75947511	0/0	t0115	9482	1	0	0	1	0	0	copy fasta	FBXO22	chr15	75898878	75947511
FBXO22_chr15_75898878_75947511	1/0	t0116	9496	1	0	0	0	0	0	copy fasta	FBXO22	chr15	75898878	75947511
FBXO22_chr15_75898878_75947511	0/0	t0117	9499	1	1	0	0	0	0	copy fasta	FBXO22	chr15	75898878	75947511
FBXO22_chr15_75898878_75947511	0/0	t0118	9500	1	1	0	0	0	0	copy fasta	FBXO22	chr15	75898878	75947511
FBXO22_chr15_75898878_75947511	0/0	t0119	9492	1	1	0	0	0	0	copy fasta	FBXO22	chr15	75898878	75947511
FBXO22_chr15_75898878_75947511	0/0	t0120	9492	1	1	0	0	0	0	copy fasta	FBXO22	chr15	75898878	75947511
FBXO22_chr15_75898878_75947511	0/0	t0121	9494	1	1	0	0	0	0	copy fasta	FBXO22	chr15	75898878	75947511
FBXO22_chr15_75898878_75947511	0/0	t0122	9484	1	0	0	1	0	0	copy fasta	FBXO22	chr15	75898878	75947511
FBXO22_chr15_75898878_75947511	0/0	t0123	9485	1	0	1	0	0	0	copy fasta	FBXO22	chr15	75898878	75947511
FBXO22_chr15_75898878_75947511	0/0	t0124	9483	1	0	1	0	0	0	copy fasta	FBXO22	chr15	75898878	75947511
FBXO22_chr15_75898878_75947511	0/0	t0125	9482	1	1	0	0	0	0	copy fasta	FBXO22	chr15	75898878	75947511
FBXO22_chr15_75898878_75947511	0/0	t0126	9500	1	1	0	0	0	0	copy fasta	FBXO22	chr15	75898878	75947511
FBXO22_chr15_75898878_75947511	0/0	t0127	9484	1	0	0	1	0	0	copy fasta	FBXO22	chr15	75898878	75947511
FBXO22_chr15_75898878_75947511	0/0	t0128	9480	1	0	0	0	0	1	copy fasta	FBXO22	chr15	75898878	75947511
FBXO22_chr15_75898878_75947511	0/0	t0129	9483	1	0	1	0	0	0	copy fasta	FBXO22	chr15	75898878	75947511
FBXO22_chr15_75898878_75947511	0/0	t0130	9486	1	1	0	0	0	0	copy fasta	FBXO22	chr15	75898878	75947511
FBXO22_chr15_75898878_75947511	0/0	t0131	9484	1	1	0	0	0	0	copy fasta	FBXO22	chr15	75898878	75947511
FBXO22_chr15_75898878_75947511	0/0	t0132	9483	1	0	0	1	0	0	copy fasta	FBXO22	chr15	75898878	75947511
FBXO24_chr7_100581328_100606117	1/1	t0001	517	328	89	55	127	15	40	copy fasta	FBXO24	chr7	100581328	100606117
FBXO24_chr7_100581328_100606117	0/0	t0002	517	3	0	0	3	0	0	copy fasta	FBXO24	chr7	100581328	100606117
FBXO24_chr7_100581328_100606117	0/0	t0003	517	3	0	0	0	0	3	copy fasta	FBXO24	chr7	100581328	100606117
FBXO24_chr7_100581328_100606117	0/0	t0004	517	1	0	1	0	0	0	copy fasta	FBXO24	chr7	100581328	100606117
FBXO24_chr7_100581328_100606117	0/0	t0005	517	1	1	0	0	0	0	copy fasta	FBXO24	chr7	100581328	100606117
FBXO24_chr7_100581328_100606117	0/0	t0006	517	1	0	0	0	1	0	copy fasta	FBXO24	chr7	100581328	100606117
FBXO24_chr7_100581328_100606117	0/0	t0007	517	1	0	0	0	0	1	copy fasta	FBXO24	chr7	100581328	100606117
FBXO24_chr7_100581328_100606117	0/0	t0008	517	1	1	0	0	0	0	copy fasta	FBXO24	chr7	100581328	100606117
FBXO24_chr7_100581328_100606117	0/0	t0009	517	1	1	0	0	0	0	copy fasta	FBXO24	chr7	100581328	100606117
FBXO25_chr8_401958_482967	0/0	t0001	9280	88	6	19	51	3	9	copy fasta	FBXO25	chr8	401958	482967
FBXO25_chr8_401958_482967	0/0	t0002	9289	21	0	2	14	1	4	copy fasta	FBXO25	chr8	401958	482967
FBXO25_chr8_401958_482967	0/0	t0003	9289	20	0	4	14	0	2	copy fasta	FBXO25	chr8	401958	482967
FBXO25_chr8_401958_482967	0/0	t0004	9280	14	0	0	14	0	0	copy fasta	FBXO25	chr8	401958	482967
FBXO25_chr8_401958_482967	0/0	t0005	9280	13	2	7	0	1	3	copy fasta	FBXO25	chr8	401958	482967
FBXO25_chr8_401958_482967	0/0	t0006	9283	11	8	2	0	1	0	copy fasta	FBXO25	chr8	401958	482967
FBXO25_chr8_401958_482967	0/0	t0007	9261	11	2	0	7	0	2	copy fasta	FBXO25	chr8	401958	482967
FBXO25_chr8_401958_482967	0/0	t0008	9261	11	0	0	11	0	0	copy fasta	FBXO25	chr8	401958	482967
FBXO25_chr8_401958_482967	0/0	t0009	9280	8	7	1	0	0	0	copy fasta	FBXO25	chr8	401958	482967
FBXO25_chr8_401958_482967	0/0	t0010	9280	8	8	0	0	0	0	copy fasta	FBXO25	chr8	401958	482967