JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FBXO25_chr8_401958_482967	0/0	t0011	9261	8	0	0	8	0	0	copy fasta	FBXO25	chr8	401958	482967
FBXO25_chr8_401958_482967	0/0	t0012	9287	6	0	0	6	0	0	copy fasta	FBXO25	chr8	401958	482967
FBXO25_chr8_401958_482967	0/0	t0013	9284	6	0	5	0	0	1	copy fasta	FBXO25	chr8	401958	482967
FBXO25_chr8_401958_482967	0/0	t0014	9297	5	4	1	0	0	0	copy fasta	FBXO25	chr8	401958	482967
FBXO25_chr8_401958_482967	0/0	t0015	9297	4	2	2	0	0	0	copy fasta	FBXO25	chr8	401958	482967
FBXO25_chr8_401958_482967	0/0	t0016	9283	4	0	2	0	1	1	copy fasta	FBXO25	chr8	401958	482967
FBXO25_chr8_401958_482967	0/0	t0017	9284	4	0	0	4	0	0	copy fasta	FBXO25	chr8	401958	482967
FBXO25_chr8_401958_482967	0/0	t0018	9289	4	0	2	0	2	0	copy fasta	FBXO25	chr8	401958	482967
FBXO25_chr8_401958_482967	0/0	t0019	9262	4	1	1	0	1	1	copy fasta	FBXO25	chr8	401958	482967
FBXO25_chr8_401958_482967	0/0	t0020	9286	4	4	0	0	0	0	copy fasta	FBXO25	chr8	401958	482967
FBXO25_chr8_401958_482967	0/0	t0021	9290	3	3	0	0	0	0	copy fasta	FBXO25	chr8	401958	482967
FBXO25_chr8_401958_482967	0/0	t0022	9289	3	0	0	1	0	2	copy fasta	FBXO25	chr8	401958	482967
FBXO25_chr8_401958_482967	0/0	t0023	9284	3	0	1	0	0	2	copy fasta	FBXO25	chr8	401958	482967
FBXO25_chr8_401958_482967	0/0	t0024	9284	3	0	3	0	0	0	copy fasta	FBXO25	chr8	401958	482967
FBXO25_chr8_401958_482967	0/0	t0025	9280	3	0	0	3	0	0	copy fasta	FBXO25	chr8	401958	482967
FBXO25_chr8_401958_482967	0/0	t0026	9280	3	0	3	0	0	0	copy fasta	FBXO25	chr8	401958	482967
FBXO25_chr8_401958_482967	0/0	t0027	9280	3	3	0	0	0	0	copy fasta	FBXO25	chr8	401958	482967
FBXO25_chr8_401958_482967	0/0	t0028	9297	3	3	0	0	0	0	copy fasta	FBXO25	chr8	401958	482967
FBXO25_chr8_401958_482967	0/0	t0029	9136	3	3	0	0	0	0	copy fasta	FBXO25	chr8	401958	482967
FBXO25_chr8_401958_482967	0/0	t0030	9289	2	0	0	2	0	0	copy fasta	FBXO25	chr8	401958	482967
FBXO25_chr8_401958_482967	0/0	t0031	9283	2	0	2	0	0	0	copy fasta	FBXO25	chr8	401958	482967
FBXO25_chr8_401958_482967	0/0	t0032	9287	2	0	0	2	0	0	copy fasta	FBXO25	chr8	401958	482967
FBXO25_chr8_401958_482967	0/0	t0033	9282	2	0	0	2	0	0	copy fasta	FBXO25	chr8	401958	482967
FBXO25_chr8_401958_482967	0/0	t0034	9282	2	1	1	0	0	0	copy fasta	FBXO25	chr8	401958	482967
FBXO25_chr8_401958_482967	0/0	t0035	9287	2	2	0	0	0	0	copy fasta	FBXO25	chr8	401958	482967
FBXO25_chr8_401958_482967	0/0	t0036	9283	2	2	0	0	0	0	copy fasta	FBXO25	chr8	401958	482967
FBXO25_chr8_401958_482967	0/0	t0037	9285	2	2	0	0	0	0	copy fasta	FBXO25	chr8	401958	482967
FBXO25_chr8_401958_482967	0/0	t0038	9285	2	1	1	0	0	0	copy fasta	FBXO25	chr8	401958	482967
FBXO25_chr8_401958_482967	0/0	t0039	9280	2	0	2	0	0	0	copy fasta	FBXO25	chr8	401958	482967
FBXO25_chr8_401958_482967	0/0	t0040	9280	2	0	0	2	0	0	copy fasta	FBXO25	chr8	401958	482967
FBXO25_chr8_401958_482967	0/0	t0041	9280	2	2	0	0	0	0	copy fasta	FBXO25	chr8	401958	482967
FBXO25_chr8_401958_482967	0/0	t0042	9280	2	2	0	0	0	0	copy fasta	FBXO25	chr8	401958	482967
FBXO25_chr8_401958_482967	0/0	t0043	9284	2	2	0	0	0	0	copy fasta	FBXO25	chr8	401958	482967
FBXO25_chr8_401958_482967	0/0	t0044	9289	2	0	0	2	0	0	copy fasta	FBXO25	chr8	401958	482967
FBXO25_chr8_401958_482967	0/1	t0045	9261	2	0	1	0	0	0	copy fasta	FBXO25	chr8	401958	482967
FBXO25_chr8_401958_482967	0/0	t0046	9261	2	0	2	0	0	0	copy fasta	FBXO25	chr8	401958	482967
FBXO25_chr8_401958_482967	0/0	t0047	9261	2	0	1	0	0	1	copy fasta	FBXO25	chr8	401958	482967
FBXO25_chr8_401958_482967	0/0	t0048	9262	2	0	1	0	0	1	copy fasta	FBXO25	chr8	401958	482967
FBXO25_chr8_401958_482967	0/0	t0049	9266	2	2	0	0	0	0	copy fasta	FBXO25	chr8	401958	482967
FBXO25_chr8_401958_482967	0/0	t0050	9290	2	2	0	0	0	0	copy fasta	FBXO25	chr8	401958	482967
FBXO25_chr8_401958_482967	0/0	t0051	9290	1	1	0	0	0	0	copy fasta	FBXO25	chr8	401958	482967
FBXO25_chr8_401958_482967	0/0	t0052	9290	1	1	0	0	0	0	copy fasta	FBXO25	chr8	401958	482967
FBXO25_chr8_401958_482967	0/0	t0053	9284	1	1	0	0	0	0	copy fasta	FBXO25	chr8	401958	482967
FBXO25_chr8_401958_482967	0/0	t0054	9283	1	0	0	0	0	1	copy fasta	FBXO25	chr8	401958	482967
FBXO25_chr8_401958_482967	0/0	t0055	9286	1	1	0	0	0	0	copy fasta	FBXO25	chr8	401958	482967
FBXO25_chr8_401958_482967	0/0	t0056	9296	1	1	0	0	0	0	copy fasta	FBXO25	chr8	401958	482967
FBXO25_chr8_401958_482967	0/0	t0057	9287	1	0	0	1	0	0	copy fasta	FBXO25	chr8	401958	482967
FBXO25_chr8_401958_482967	0/0	t0058	9282	1	1	0	0	0	0	copy fasta	FBXO25	chr8	401958	482967
FBXO25_chr8_401958_482967	0/0	t0059	9287	1	0	0	0	0	1	copy fasta	FBXO25	chr8	401958	482967
FBXO25_chr8_401958_482967	0/0	t0060	9287	1	0	0	1	0	0	copy fasta	FBXO25	chr8	401958	482967