JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FBXO25_chr8_401958_482967	0/0	t0111	9280	1	1	0	0	0	0	copy fasta	FBXO25	chr8	401958	482967
FBXO25_chr8_401958_482967	0/0	t0112	9280	1	0	0	1	0	0	copy fasta	FBXO25	chr8	401958	482967
FBXO25_chr8_401958_482967	0/0	t0113	9258	1	0	0	0	0	1	copy fasta	FBXO25	chr8	401958	482967
FBXO25_chr8_401958_482967	0/0	t0114	9262	1	0	1	0	0	0	copy fasta	FBXO25	chr8	401958	482967
FBXO25_chr8_401958_482967	0/0	t0115	9262	1	0	0	1	0	0	copy fasta	FBXO25	chr8	401958	482967
FBXO25_chr8_401958_482967	0/0	t0116	9282	1	0	0	1	0	0	copy fasta	FBXO25	chr8	401958	482967
FBXO25_chr8_401958_482967	0/0	t0117	9282	1	0	1	0	0	0	copy fasta	FBXO25	chr8	401958	482967
FBXO25_chr8_401958_482967	0/0	t0118	9261	1	0	0	0	0	1	copy fasta	FBXO25	chr8	401958	482967
FBXO25_chr8_401958_482967	0/0	t0119	9261	1	0	0	1	0	0	copy fasta	FBXO25	chr8	401958	482967
FBXO25_chr8_401958_482967	0/0	t0120	9261	1	0	0	0	0	1	copy fasta	FBXO25	chr8	401958	482967
FBXO25_chr8_401958_482967	0/0	t0121	9261	1	0	0	0	0	1	copy fasta	FBXO25	chr8	401958	482967
FBXO25_chr8_401958_482967	0/0	t0122	9261	1	0	0	1	0	0	copy fasta	FBXO25	chr8	401958	482967
FBXO25_chr8_401958_482967	0/0	t0123	9261	1	0	0	1	0	0	copy fasta	FBXO25	chr8	401958	482967
FBXO25_chr8_401958_482967	0/0	t0124	9261	1	0	0	0	0	1	copy fasta	FBXO25	chr8	401958	482967
FBXO25_chr8_401958_482967	0/0	t0125	9266	1	0	0	1	0	0	copy fasta	FBXO25	chr8	401958	482967
FBXO25_chr8_401958_482967	0/0	t0126	9261	1	0	0	0	0	1	copy fasta	FBXO25	chr8	401958	482967
FBXO25_chr8_401958_482967	0/0	t0127	9266	1	0	0	1	0	0	copy fasta	FBXO25	chr8	401958	482967
FBXO25_chr8_401958_482967	0/0	t0128	9261	1	0	1	0	0	0	copy fasta	FBXO25	chr8	401958	482967
FBXO25_chr8_401958_482967	0/0	t0129	9261	1	0	0	0	0	1	copy fasta	FBXO25	chr8	401958	482967
FBXO25_chr8_401958_482967	0/0	t0130	9313	1	1	0	0	0	0	copy fasta	FBXO25	chr8	401958	482967
FBXO25_chr8_401958_482967	0/0	t0131	9271	1	1	0	0	0	0	copy fasta	FBXO25	chr8	401958	482967
FBXO25_chr8_401958_482967	0/0	t0132	9286	1	1	0	0	0	0	copy fasta	FBXO25	chr8	401958	482967
FBXO25_chr8_401958_482967	0/0	t0133	9285	1	1	0	0	0	0	copy fasta	FBXO25	chr8	401958	482967
FBXO25_chr8_401958_482967	0/0	t0134	9300	1	1	0	0	0	0	copy fasta	FBXO25	chr8	401958	482967
FBXO25_chr8_401958_482967	0/0	t0135	9300	1	1	0	0	0	0	copy fasta	FBXO25	chr8	401958	482967
FBXO25_chr8_401958_482967	0/0	t0136	9266	1	0	1	0	0	0	copy fasta	FBXO25	chr8	401958	482967
FBXO25_chr8_401958_482967	0/0	t0137	9266	1	1	0	0	0	0	copy fasta	FBXO25	chr8	401958	482967
FBXO25_chr8_401958_482967	0/0	t0138	9262	1	0	0	0	0	1	copy fasta	FBXO25	chr8	401958	482967
FBXO25_chr8_401958_482967	0/0	t0139	9284	1	0	0	0	0	1	copy fasta	FBXO25	chr8	401958	482967
FBXO27_chr19_39019021_39037549	0/0	t0001	1464	161	33	31	73	9	15	copy fasta	FBXO27	chr19	39019021	39037549
FBXO27_chr19_39019021_39037549	0/0	t0002	1464	125	5	22	76	2	20	copy fasta	FBXO27	chr19	39019021	39037549
FBXO27_chr19_39019021_39037549	1/1	t0003	1464	49	2	10	24	4	7	copy fasta	FBXO27	chr19	39019021	39037549
FBXO27_chr19_39019021_39037549	0/0	t0004	1464	32	19	2	9	0	2	copy fasta	FBXO27	chr19	39019021	39037549
FBXO27_chr19_39019021_39037549	0/0	t0005	1464	21	3	9	2	1	6	copy fasta	FBXO27	chr19	39019021	39037549
FBXO27_chr19_39019021_39037549	0/0	t0006	1464	11	10	1	0	0	0	copy fasta	FBXO27	chr19	39019021	39037549
FBXO27_chr19_39019021_39037549	0/0	t0007	1464	7	7	0	0	0	0	copy fasta	FBXO27	chr19	39019021	39037549
FBXO27_chr19_39019021_39037549	0/0	t0008	1464	5	5	0	0	0	0	copy fasta	FBXO27	chr19	39019021	39037549
FBXO27_chr19_39019021_39037549	0/0	t0009	1464	3	3	0	0	0	0	copy fasta	FBXO27	chr19	39019021	39037549
FBXO27_chr19_39019021_39037549	0/0	t0010	1464	2	2	0	0	0	0	copy fasta	FBXO27	chr19	39019021	39037549
FBXO27_chr19_39019021_39037549	0/0	t0011	1464	1	1	0	0	0	0	copy fasta	FBXO27	chr19	39019021	39037549
FBXO27_chr19_39019021_39037549	0/0	t0012	1464	1	0	0	1	0	0	copy fasta	FBXO27	chr19	39019021	39037549
FBXO27_chr19_39019021_39037549	0/0	t0013	1464	1	1	0	0	0	0	copy fasta	FBXO27	chr19	39019021	39037549
FBXO27_chr19_39019021_39037549	0/0	t0014	1464	1	1	0	0	0	0	copy fasta	FBXO27	chr19	39019021	39037549
FBXO27_chr19_39019021_39037549	0/0	t0015	1464	1	0	0	1	0	0	copy fasta	FBXO27	chr19	39019021	39037549
FBXO27_chr19_39019021_39037549	0/0	t0016	1464	1	1	0	0	0	0	copy fasta	FBXO27	chr19	39019021	39037549
FBXO27_chr19_39019021_39037549	0/0	t0017	1464	1	1	0	0	0	0	copy fasta	FBXO27	chr19	39019021	39037549
FBXO27_chr19_39019021_39037549	0/0	t0018	1464	1	0	1	0	0	0	copy fasta	FBXO27	chr19	39019021	39037549
FBXO28_chr1_224109111_224167047	0/1	t0001	4321	117	13	16	62	6	19	copy fasta	FBXO28	chr1	224109111	224167047
FBXO28_chr1_224109111_224167047	0/0	t0002	4321	108	19	25	59	0	5	copy fasta	FBXO28	chr1	224109111	224167047
FBXO28_chr1_224109111_224167047	0/0	t0003	4319	57	18	12	20	4	3	copy fasta	FBXO28	chr1	224109111	224167047