JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FOSL2_chr2_28387858_28422317	0/0	t0076	5728	1	1	0	0	0	0	copy fasta	FOSL2	chr2	28387858	28422317
FOSL2_chr2_28387858_28422317	0/0	t0077	5727	1	0	1	0	0	0	copy fasta	FOSL2	chr2	28387858	28422317
FOSL2_chr2_28387858_28422317	0/0	t0078	5728	1	0	1	0	0	0	copy fasta	FOSL2	chr2	28387858	28422317
FOSL2_chr2_28387858_28422317	0/0	t0079	5726	1	1	0	0	0	0	copy fasta	FOSL2	chr2	28387858	28422317
FOSL2_chr2_28387858_28422317	0/0	t0080	5726	1	0	0	1	0	0	copy fasta	FOSL2	chr2	28387858	28422317
FOS_chr14_75273828_75287230	0/0	t0001	962	288	84	50	109	10	35	copy fasta	FOS	chr14	75273828	75287230
FOS_chr14_75273828_75287230	1/1	t0002	962	154	3	24	106	6	13	copy fasta	FOS	chr14	75273828	75287230
FOS_chr14_75273828_75287230	0/0	t0003	962	1	1	0	0	0	0	copy fasta	FOS	chr14	75273828	75287230
FOS_chr14_75273828_75287230	0/0	t0004	962	1	1	0	0	0	0	copy fasta	FOS	chr14	75273828	75287230
FOS_chr14_75273828_75287230	0/0	t0005	962	1	0	0	1	0	0	copy fasta	FOS	chr14	75273828	75287230
FOS_chr14_75273828_75287230	0/0	t0006	962	1	1	0	0	0	0	copy fasta	FOS	chr14	75273828	75287230
FOXA1_chr14_37584552_37600249	0/0	t0001	2089	81	3	27	45	3	3	copy fasta	FOXA1	chr14	37584552	37600249
FOXA1_chr14_37584552_37600249	0/0	t0002	2087	43	2	9	30	0	2	copy fasta	FOXA1	chr14	37584552	37600249
FOXA1_chr14_37584552_37600249	1/0	t0003	2091	40	4	16	3	5	11	copy fasta	FOXA1	chr14	37584552	37600249
FOXA1_chr14_37584552_37600249	0/1	t0004	2086	35	5	3	19	4	3	copy fasta	FOXA1	chr14	37584552	37600249
FOXA1_chr14_37584552_37600249	0/0	t0005	2087	29	17	3	2	1	6	copy fasta	FOXA1	chr14	37584552	37600249
FOXA1_chr14_37584552_37600249	0/0	t0006	2090	28	0	4	24	0	0	copy fasta	FOXA1	chr14	37584552	37600249
FOXA1_chr14_37584552_37600249	0/0	t0007	2090	18	10	4	0	2	2	copy fasta	FOXA1	chr14	37584552	37600249
FOXA1_chr14_37584552_37600249	0/0	t0008	2087	15	9	0	3	0	3	copy fasta	FOXA1	chr14	37584552	37600249
FOXA1_chr14_37584552_37600249	0/0	t0009	2088	15	3	0	11	0	1	copy fasta	FOXA1	chr14	37584552	37600249
FOXA1_chr14_37584552_37600249	0/0	t0010	2085	10	10	0	0	0	0	copy fasta	FOXA1	chr14	37584552	37600249
FOXA1_chr14_37584552_37600249	0/0	t0011	2088	10	5	1	4	0	0	copy fasta	FOXA1	chr14	37584552	37600249
FOXA1_chr14_37584552_37600249	0/0	t0012	2090	8	0	1	4	1	2	copy fasta	FOXA1	chr14	37584552	37600249
FOXA1_chr14_37584552_37600249	0/0	t0013	2093	7	7	0	0	0	0	copy fasta	FOXA1	chr14	37584552	37600249
FOXA1_chr14_37584552_37600249	0/0	t0014	2087	7	6	1	0	0	0	copy fasta	FOXA1	chr14	37584552	37600249
FOXA1_chr14_37584552_37600249	0/0	t0015	2089	5	3	0	2	0	0	copy fasta	FOXA1	chr14	37584552	37600249
FOXA1_chr14_37584552_37600249	0/0	t0016	2090	4	0	0	4	0	0	copy fasta	FOXA1	chr14	37584552	37600249
FOXA1_chr14_37584552_37600249	0/0	t0017	2092	3	0	2	0	0	1	copy fasta	FOXA1	chr14	37584552	37600249
FOXA1_chr14_37584552_37600249	0/0	t0018	2093	3	3	0	0	0	0	copy fasta	FOXA1	chr14	37584552	37600249
FOXA1_chr14_37584552_37600249	0/0	t0019	2089	3	0	2	0	0	1	copy fasta	FOXA1	chr14	37584552	37600249
FOXA1_chr14_37584552_37600249	0/0	t0020	2086	3	2	1	0	0	0	copy fasta	FOXA1	chr14	37584552	37600249
FOXA1_chr14_37584552_37600249	0/0	t0021	2088	3	2	1	0	0	0	copy fasta	FOXA1	chr14	37584552	37600249
FOXA1_chr14_37584552_37600249	0/0	t0022	2089	3	0	0	3	0	0	copy fasta	FOXA1	chr14	37584552	37600249
FOXA1_chr14_37584552_37600249	0/0	t0023	2086	3	1	0	2	0	0	copy fasta	FOXA1	chr14	37584552	37600249
FOXA1_chr14_37584552_37600249	0/0	t0024	2095	2	0	0	2	0	0	copy fasta	FOXA1	chr14	37584552	37600249
FOXA1_chr14_37584552_37600249	0/0	t0025	2085	2	1	1	0	0	0	copy fasta	FOXA1	chr14	37584552	37600249
FOXA1_chr14_37584552_37600249	0/0	t0026	2086	2	0	0	0	0	2	copy fasta	FOXA1	chr14	37584552	37600249
FOXA1_chr14_37584552_37600249	0/0	t0027	2092	1	0	0	0	0	1	copy fasta	FOXA1	chr14	37584552	37600249
FOXA1_chr14_37584552_37600249	0/0	t0028	2091	1	0	1	0	0	0	copy fasta	FOXA1	chr14	37584552	37600249
FOXA1_chr14_37584552_37600249	0/0	t0029	2092	1	0	0	0	0	1	copy fasta	FOXA1	chr14	37584552	37600249
FOXA1_chr14_37584552_37600249	0/0	t0030	2088	1	0	1	0	0	0	copy fasta	FOXA1	chr14	37584552	37600249
FOXA1_chr14_37584552_37600249	0/0	t0031	2086	1	0	0	1	0	0	copy fasta	FOXA1	chr14	37584552	37600249
FOXA1_chr14_37584552_37600249	0/0	t0032	2086	1	0	0	0	0	1	copy fasta	FOXA1	chr14	37584552	37600249
FOXA1_chr14_37584552_37600249	0/0	t0033	2087	1	1	0	0	0	0	copy fasta	FOXA1	chr14	37584552	37600249
FOXA1_chr14_37584552_37600249	0/0	t0034	2086	1	0	0	1	0	0	copy fasta	FOXA1	chr14	37584552	37600249
FOXA1_chr14_37584552_37600249	0/0	t0035	2087	1	0	0	1	0	0	copy fasta	FOXA1	chr14	37584552	37600249
FOXA1_chr14_37584552_37600249	0/0	t0036	2089	1	0	0	1	0	0	copy fasta	FOXA1	chr14	37584552	37600249
FOXA1_chr14_37584552_37600249	0/0	t0037	2090	1	0	0	1	0	0	copy fasta	FOXA1	chr14	37584552	37600249
FOXA1_chr14_37584552_37600249	0/0	t0038	2065	1	0	0	1	0	0	copy fasta	FOXA1	chr14	37584552	37600249
FOXA2_chr20_22575998_22589572	0/0	t0001	1147	211	29	50	90	11	31	copy fasta	FOXA2	chr20	22575998	22589572