JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FOXA2_chr20_22575998_22589572	0/0	t0002	1150	53	9	1	42	0	1	copy fasta	FOXA2	chr20	22575998	22589572
FOXA2_chr20_22575998_22589572	0/0	t0003	1149	17	8	0	6	0	3	copy fasta	FOXA2	chr20	22575998	22589572
FOXA2_chr20_22575998_22589572	0/0	t0004	1148	14	1	4	5	0	4	copy fasta	FOXA2	chr20	22575998	22589572
FOXA2_chr20_22575998_22589572	0/0	t0005	1150	10	10	0	0	0	0	copy fasta	FOXA2	chr20	22575998	22589572
FOXA2_chr20_22575998_22589572	0/0	t0006	1151	5	5	0	0	0	0	copy fasta	FOXA2	chr20	22575998	22589572
FOXA2_chr20_22575998_22589572	0/0	t0007	1148	5	5	0	0	0	0	copy fasta	FOXA2	chr20	22575998	22589572
FOXA2_chr20_22575998_22589572	0/0	t0008	1147	5	5	0	0	0	0	copy fasta	FOXA2	chr20	22575998	22589572
FOXA2_chr20_22575998_22589572	0/0	t0009	1149	4	4	0	0	0	0	copy fasta	FOXA2	chr20	22575998	22589572
FOXA2_chr20_22575998_22589572	0/0	t0010	1147	3	0	0	3	0	0	copy fasta	FOXA2	chr20	22575998	22589572
FOXA2_chr20_22575998_22589572	0/0	t0011	1146	3	0	1	2	0	0	copy fasta	FOXA2	chr20	22575998	22589572
FOXA2_chr20_22575998_22589572	0/0	t0012	1150	3	3	0	0	0	0	copy fasta	FOXA2	chr20	22575998	22589572
FOXA2_chr20_22575998_22589572	0/0	t0013	1150	3	3	0	0	0	0	copy fasta	FOXA2	chr20	22575998	22589572
FOXA2_chr20_22575998_22589572	0/0	t0014	1148	3	3	0	0	0	0	copy fasta	FOXA2	chr20	22575998	22589572
FOXA2_chr20_22575998_22589572	0/0	t0015	1147	3	2	1	0	0	0	copy fasta	FOXA2	chr20	22575998	22589572
FOXA2_chr20_22575998_22589572	0/0	t0016	1150	2	0	2	0	0	0	copy fasta	FOXA2	chr20	22575998	22589572
FOXA2_chr20_22575998_22589572	0/0	t0017	1147	2	0	0	2	0	0	copy fasta	FOXA2	chr20	22575998	22589572
FOXA2_chr20_22575998_22589572	0/0	t0018	1147	2	1	1	0	0	0	copy fasta	FOXA2	chr20	22575998	22589572
FOXA2_chr20_22575998_22589572	0/0	t0019	1149	2	2	0	0	0	0	copy fasta	FOXA2	chr20	22575998	22589572
FOXA2_chr20_22575998_22589572	0/0	t0020	1150	2	2	0	0	0	0	copy fasta	FOXA2	chr20	22575998	22589572
FOXA2_chr20_22575998_22589572	0/0	t0021	1147	2	1	0	0	1	0	copy fasta	FOXA2	chr20	22575998	22589572
FOXA2_chr20_22575998_22589572	0/0	t0022	1151	2	0	0	2	0	0	copy fasta	FOXA2	chr20	22575998	22589572
FOXA2_chr20_22575998_22589572	0/0	t0023	1147	2	0	0	2	0	0	copy fasta	FOXA2	chr20	22575998	22589572
FOXA2_chr20_22575998_22589572	0/0	t0024	1149	1	0	1	0	0	0	copy fasta	FOXA2	chr20	22575998	22589572
FOXA2_chr20_22575998_22589572	0/0	t0025	1150	1	0	1	0	0	0	copy fasta	FOXA2	chr20	22575998	22589572
FOXA2_chr20_22575998_22589572	0/0	t0026	1148	1	0	0	1	0	0	copy fasta	FOXA2	chr20	22575998	22589572
FOXA2_chr20_22575998_22589572	0/0	t0027	1149	1	0	0	1	0	0	copy fasta	FOXA2	chr20	22575998	22589572
FOXA2_chr20_22575998_22589572	0/0	t0028	1149	1	0	1	0	0	0	copy fasta	FOXA2	chr20	22575998	22589572
FOXA2_chr20_22575998_22589572	0/0	t0029	1149	1	0	0	0	0	1	copy fasta	FOXA2	chr20	22575998	22589572
FOXA2_chr20_22575998_22589572	0/0	t0030	1148	1	1	0	0	0	0	copy fasta	FOXA2	chr20	22575998	22589572
FOXA2_chr20_22575998_22589572	0/0	t0031	1147	1	0	0	1	0	0	copy fasta	FOXA2	chr20	22575998	22589572
FOXA2_chr20_22575998_22589572	0/0	t0032	1148	1	0	0	0	0	1	copy fasta	FOXA2	chr20	22575998	22589572
FOXA2_chr20_22575998_22589572	0/0	t0033	1149	1	0	0	1	0	0	copy fasta	FOXA2	chr20	22575998	22589572
FOXA2_chr20_22575998_22589572	0/0	t0034	1148	1	1	0	0	0	0	copy fasta	FOXA2	chr20	22575998	22589572
FOXA2_chr20_22575998_22589572	0/0	t0035	1151	1	1	0	0	0	0	copy fasta	FOXA2	chr20	22575998	22589572
FOXA2_chr20_22575998_22589572	0/0	t0036	1150	1	0	0	0	0	1	copy fasta	FOXA2	chr20	22575998	22589572
FOXA2_chr20_22575998_22589572	0/0	t0037	1147	1	0	1	0	0	0	copy fasta	FOXA2	chr20	22575998	22589572
FOXA3_chr19_45859326_45878797	1/1	t0001	871	365	78	62	175	15	33	copy fasta	FOXA3	chr19	45859326	45878797
FOXA3_chr19_45859326_45878797	0/0	t0002	871	65	11	19	24	1	10	copy fasta	FOXA3	chr19	45859326	45878797
FOXA3_chr19_45859326_45878797	0/0	t0003	871	5	4	1	0	0	0	copy fasta	FOXA3	chr19	45859326	45878797
FOXA3_chr19_45859326_45878797	0/0	t0004	872	4	0	0	4	0	0	copy fasta	FOXA3	chr19	45859326	45878797
FOXA3_chr19_45859326_45878797	0/0	t0005	871	2	0	2	0	0	0	copy fasta	FOXA3	chr19	45859326	45878797
FOXA3_chr19_45859326_45878797	0/0	t0006	871	1	0	0	1	0	0	copy fasta	FOXA3	chr19	45859326	45878797
FOXA3_chr19_45859326_45878797	0/0	t0007	871	1	0	0	0	0	1	copy fasta	FOXA3	chr19	45859326	45878797
FOXA3_chr19_45859326_45878797	0/0	t0008	871	1	1	0	0	0	0	copy fasta	FOXA3	chr19	45859326	45878797
FOXB1_chr15_59999311_60012444	0/0	t0001	1894	89	7	11	55	3	13	copy fasta	FOXB1	chr15	59999311	60012444
FOXB1_chr15_59999311_60012444	0/0	t0002	1898	83	35	6	30	4	8	copy fasta	FOXB1	chr15	59999311	60012444
FOXB1_chr15_59999311_60012444	0/0	t0003	1887	73	0	18	44	5	6	copy fasta	FOXB1	chr15	59999311	60012444
FOXB1_chr15_59999311_60012444	0/0	t0004	1898	40	0	1	37	0	2	copy fasta	FOXB1	chr15	59999311	60012444
FOXB1_chr15_59999311_60012444	0/0	t0005	1895	26	1	9	7	2	7	copy fasta	FOXB1	chr15	59999311	60012444
FOXB1_chr15_59999311_60012444	1/0	t0006	1894	16	13	2	0	0	0	copy fasta	FOXB1	chr15	59999311	60012444