JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GALNT3_chr2_165742588_165799247	0/0	t0009	1535	1	0	1	0	0	0	copy fasta	GALNT3	chr2	165742588	165799247
GALNT3_chr2_165742588_165799247	0/0	t0010	1535	1	0	0	0	0	1	copy fasta	GALNT3	chr2	165742588	165799247
GALNT3_chr2_165742588_165799247	0/0	t0011	1535	1	0	0	1	0	0	copy fasta	GALNT3	chr2	165742588	165799247
GALNT4_chr12_89514412_89529796	1/0	t0001	3649	101	21	24	44	5	6	copy fasta	GALNT4	chr12	89514412	89529796
GALNT4_chr12_89514412_89529796	0/0	t0002	3649	83	14	5	59	0	5	copy fasta	GALNT4	chr12	89514412	89529796
GALNT4_chr12_89514412_89529796	0/0	t0003	3649	69	9	14	29	4	13	copy fasta	GALNT4	chr12	89514412	89529796
GALNT4_chr12_89514412_89529796	0/0	t0004	3650	66	12	11	35	2	6	copy fasta	GALNT4	chr12	89514412	89529796
GALNT4_chr12_89514412_89529796	0/0	t0005	3649	26	0	5	19	0	2	copy fasta	GALNT4	chr12	89514412	89529796
GALNT4_chr12_89514412_89529796	0/1	t0006	3649	18	6	6	1	1	3	copy fasta	GALNT4	chr12	89514412	89529796
GALNT4_chr12_89514412_89529796	0/0	t0007	3651	10	8	1	1	0	0	copy fasta	GALNT4	chr12	89514412	89529796
GALNT4_chr12_89514412_89529796	0/0	t0008	3649	7	0	0	7	0	0	copy fasta	GALNT4	chr12	89514412	89529796
GALNT4_chr12_89514412_89529796	0/0	t0009	3649	6	6	0	0	0	0	copy fasta	GALNT4	chr12	89514412	89529796
GALNT4_chr12_89514412_89529796	0/0	t0010	3650	4	4	0	0	0	0	copy fasta	GALNT4	chr12	89514412	89529796
GALNT4_chr12_89514412_89529796	0/0	t0011	3649	4	4	0	0	0	0	copy fasta	GALNT4	chr12	89514412	89529796
GALNT4_chr12_89514412_89529796	0/0	t0012	3648	3	0	1	0	0	2	copy fasta	GALNT4	chr12	89514412	89529796
GALNT4_chr12_89514412_89529796	0/0	t0013	3649	3	3	0	0	0	0	copy fasta	GALNT4	chr12	89514412	89529796
GALNT4_chr12_89514412_89529796	0/0	t0014	3649	3	2	1	0	0	0	copy fasta	GALNT4	chr12	89514412	89529796
GALNT4_chr12_89514412_89529796	0/0	t0015	3648	3	0	0	1	0	2	copy fasta	GALNT4	chr12	89514412	89529796
GALNT4_chr12_89514412_89529796	0/0	t0016	3650	3	0	3	0	0	0	copy fasta	GALNT4	chr12	89514412	89529796
GALNT4_chr12_89514412_89529796	0/0	t0017	3650	2	0	2	0	0	0	copy fasta	GALNT4	chr12	89514412	89529796
GALNT4_chr12_89514412_89529796	0/0	t0018	3649	2	0	2	0	0	0	copy fasta	GALNT4	chr12	89514412	89529796
GALNT4_chr12_89514412_89529796	0/0	t0019	3650	1	1	0	0	0	0	copy fasta	GALNT4	chr12	89514412	89529796
GALNT4_chr12_89514412_89529796	0/0	t0020	3649	1	1	0	0	0	0	copy fasta	GALNT4	chr12	89514412	89529796
GALNT4_chr12_89514412_89529796	0/0	t0021	3650	1	0	0	1	0	0	copy fasta	GALNT4	chr12	89514412	89529796
GALNT4_chr12_89514412_89529796	0/0	t0022	3649	1	0	1	0	0	0	copy fasta	GALNT4	chr12	89514412	89529796
GALNT4_chr12_89514412_89529796	0/0	t0023	3648	1	0	0	1	0	0	copy fasta	GALNT4	chr12	89514412	89529796
GALNT4_chr12_89514412_89529796	0/0	t0024	3649	1	1	0	0	0	0	copy fasta	GALNT4	chr12	89514412	89529796
GALNT4_chr12_89514412_89529796	0/0	t0025	3650	1	0	0	0	0	1	copy fasta	GALNT4	chr12	89514412	89529796
GALNT4_chr12_89514412_89529796	0/0	t0026	3648	1	1	0	0	0	0	copy fasta	GALNT4	chr12	89514412	89529796
GALNT4_chr12_89514412_89529796	0/0	t0027	3621	1	0	0	1	0	0	copy fasta	GALNT4	chr12	89514412	89529796
GALNT4_chr12_89514412_89529796	0/0	t0028	3649	1	1	0	0	0	0	copy fasta	GALNT4	chr12	89514412	89529796
GALNT4_chr12_89514412_89529796	0/0	t0029	3649	1	0	0	1	0	0	copy fasta	GALNT4	chr12	89514412	89529796
GALNT4_chr12_89514412_89529796	0/0	t0030	3649	1	1	0	0	0	0	copy fasta	GALNT4	chr12	89514412	89529796
GALNT4_chr12_89514412_89529796	0/0	t0031	3650	1	0	1	0	0	0	copy fasta	GALNT4	chr12	89514412	89529796
GALNT4_chr12_89514412_89529796	0/0	t0032	3650	1	0	0	1	0	0	copy fasta	GALNT4	chr12	89514412	89529796
GALNT4_chr12_89514412_89529796	0/0	t0033	3649	1	0	0	1	0	0	copy fasta	GALNT4	chr12	89514412	89529796
GALNT4_chr12_89514412_89529796	0/0	t0034	3651	1	0	1	0	0	0	copy fasta	GALNT4	chr12	89514412	89529796
GALNT4_chr12_89514412_89529796	0/0	t0035	3649	1	1	0	0	0	0	copy fasta	GALNT4	chr12	89514412	89529796
GALNT4_chr12_89514412_89529796	0/0	t0036	3649	1	1	0	0	0	0	copy fasta	GALNT4	chr12	89514412	89529796
GALNT4_chr12_89514412_89529796	0/0	t0037	3649	1	1	0	0	0	0	copy fasta	GALNT4	chr12	89514412	89529796
GALNT5_chr2_157252705_157323491	1/1	t0001	7522	75	3	12	47	1	10	copy fasta	GALNT5	chr2	157252705	157323491
GALNT5_chr2_157252705_157323491	0/0	t0002	7522	39	2	11	22	2	2	copy fasta	GALNT5	chr2	157252705	157323491
GALNT5_chr2_157252705_157323491	0/0	t0003	7521	15	1	10	4	0	0	copy fasta	GALNT5	chr2	157252705	157323491
GALNT5_chr2_157252705_157323491	0/0	t0004	7522	9	4	0	1	0	4	copy fasta	GALNT5	chr2	157252705	157323491
GALNT5_chr2_157252705_157323491	0/0	t0005	7524	7	1	0	4	0	2	copy fasta	GALNT5	chr2	157252705	157323491
GALNT5_chr2_157252705_157323491	0/0	t0006	7524	5	0	1	1	1	2	copy fasta	GALNT5	chr2	157252705	157323491
GALNT5_chr2_157252705_157323491	0/0	t0007	7523	4	1	0	2	1	0	copy fasta	GALNT5	chr2	157252705	157323491
GALNT5_chr2_157252705_157323491	0/0	t0008	7522	4	0	4	0	0	0	copy fasta	GALNT5	chr2	157252705	157323491
GALNT5_chr2_157252705_157323491	0/0	t0009	7522	4	0	0	4	0	0	copy fasta	GALNT5	chr2	157252705	157323491
GALNT5_chr2_157252705_157323491	0/0	t0010	7531	4	3	0	0	1	0	copy fasta	GALNT5	chr2	157252705	157323491