JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	SAS	tseq	genename	chr	start	end
GALNT5_chr2_157252705_157323491	0/0	t0011	7524	3	0	0	3	0	copy fasta	GALNT5	chr2	157252705	157323491
GALNT5_chr2_157252705_157323491	0/0	t0012	7523	3	3	0	0	0	copy fasta	GALNT5	chr2	157252705	157323491
GALNT5_chr2_157252705_157323491	0/0	t0013	7531	3	3	0	0	0	copy fasta	GALNT5	chr2	157252705	157323491
GALNT5_chr2_157252705_157323491	0/0	t0014	7529	3	3	0	0	0	copy fasta	GALNT5	chr2	157252705	157323491
GALNT5_chr2_157252705_157323491	0/0	t0015	7507	2	2	0	0	0	copy fasta	GALNT5	chr2	157252705	157323491
GALNT5_chr2_157252705_157323491	0/0	t0016	7522	2	0	0	0	2	copy fasta	GALNT5	chr2	157252705	157323491
GALNT5_chr2_157252705_157323491	0/0	t0017	7522	2	2	0	0	0	copy fasta	GALNT5	chr2	157252705	157323491
GALNT5_chr2_157252705_157323491	0/0	t0018	7520	2	1	0	1	0	copy fasta	GALNT5	chr2	157252705	157323491
GALNT5_chr2_157252705_157323491	0/0	t0019	7520	2	2	0	0	0	copy fasta	GALNT5	chr2	157252705	157323491
GALNT5_chr2_157252705_157323491	0/0	t0020	7523	2	0	0	2	0	copy fasta	GALNT5	chr2	157252705	157323491
GALNT5_chr2_157252705_157323491	0/0	t0021	7522	2	0	0	2	0	copy fasta	GALNT5	chr2	157252705	157323491
GALNT5_chr2_157252705_157323491	0/0	t0022	7522	2	0	2	0	0	copy fasta	GALNT5	chr2	157252705	157323491
GALNT5_chr2_157252705_157323491	0/0	t0023	7524	2	1	1	0	0	copy fasta	GALNT5	chr2	157252705	157323491
GALNT5_chr2_157252705_157323491	0/0	t0024	7522	2	1	1	0	0	copy fasta	GALNT5	chr2	157252705	157323491
GALNT5_chr2_157252705_157323491	0/0	t0025	7521	2	2	0	0	0	copy fasta	GALNT5	chr2	157252705	157323491
GALNT5_chr2_157252705_157323491	0/0	t0026	7522	2	2	0	0	0	copy fasta	GALNT5	chr2	157252705	157323491
GALNT5_chr2_157252705_157323491	0/0	t0027	7517	2	2	0	0	0	copy fasta	GALNT5	chr2	157252705	157323491
GALNT5_chr2_157252705_157323491	0/0	t0028	7521	2	1	0	1	0	copy fasta	GALNT5	chr2	157252705	157323491
GALNT5_chr2_157252705_157323491	0/0	t0029	7521	2	0	0	2	0	copy fasta	GALNT5	chr2	157252705	157323491
GALNT5_chr2_157252705_157323491	0/0	t0030	7522	2	0	0	2	0	copy fasta	GALNT5	chr2	157252705	157323491
GALNT5_chr2_157252705_157323491	0/0	t0031	7531	2	2	0	0	0	copy fasta	GALNT5	chr2	157252705	157323491
GALNT5_chr2_157252705_157323491	0/0	t0032	7522	1	1	0	0	0	copy fasta	GALNT5	chr2	157252705	157323491
GALNT5_chr2_157252705_157323491	0/0	t0033	7520	1	1	0	0	0	copy fasta	GALNT5	chr2	157252705	157323491
GALNT5_chr2_157252705_157323491	0/0	t0034	7522	1	0	0	0	1	copy fasta	GALNT5	chr2	157252705	157323491
GALNT5_chr2_157252705_157323491	0/0	t0035	7523	1	0	1	0	0	copy fasta	GALNT5	chr2	157252705	157323491
GALNT5_chr2_157252705_157323491	0/0	t0036	7524	1	0	1	0	0	copy fasta	GALNT5	chr2	157252705	157323491
GALNT5_chr2_157252705_157323491	0/0	t0037	7522	1	0	0	1	0	copy fasta	GALNT5	chr2	157252705	157323491
GALNT5_chr2_157252705_157323491	0/0	t0038	7522	1	0	0	1	0	copy fasta	GALNT5	chr2	157252705	157323491
GALNT5_chr2_157252705_157323491	0/0	t0039	7523	1	0	0	1	0	copy fasta	GALNT5	chr2	157252705	157323491
GALNT5_chr2_157252705_157323491	0/0	t0040	7521	1	0	0	0	1	copy fasta	GALNT5	chr2	157252705	157323491
GALNT5_chr2_157252705_157323491	0/0	t0041	7519	1	1	0	0	0	copy fasta	GALNT5	chr2	157252705	157323491
GALNT5_chr2_157252705_157323491	0/0	t0042	7520	1	1	0	0	0	copy fasta	GALNT5	chr2	157252705	157323491
GALNT5_chr2_157252705_157323491	0/0	t0043	7522	1	0	0	1	0	copy fasta	GALNT5	chr2	157252705	157323491
GALNT5_chr2_157252705_157323491	0/0	t0044	7520	1	1	0	0	0	copy fasta	GALNT5	chr2	157252705	157323491
GALNT5_chr2_157252705_157323491	0/0	t0045	7521	1	0	0	1	0	copy fasta	GALNT5	chr2	157252705	157323491
GALNT5_chr2_157252705_157323491	0/0	t0046	7522	1	1	0	0	0	copy fasta	GALNT5	chr2	157252705	157323491
GALNT5_chr2_157252705_157323491	0/0	t0047	7522	1	1	0	0	0	copy fasta	GALNT5	chr2	157252705	157323491
GALNT5_chr2_157252705_157323491	0/0	t0048	7521	1	1	0	0	0	copy fasta	GALNT5	chr2	157252705	157323491
GALNT5_chr2_157252705_157323491	0/0	t0049	7522	1	0	1	0	0	copy fasta	GALNT5	chr2	157252705	157323491
GALNT5_chr2_157252705_157323491	0/0	t0050	7523	1	0	0	1	0	copy fasta	GALNT5	chr2	157252705	157323491
GALNT5_chr2_157252705_157323491	0/0	t0051	7523	1	0	1	0	0	copy fasta	GALNT5	chr2	157252705	157323491
GALNT5_chr2_157252705_157323491	0/0	t0052	7522	1	0	0	1	0	copy fasta	GALNT5	chr2	157252705	157323491
GALNT5_chr2_157252705_157323491	0/0	t0053	7522	1	0	1	0	0	copy fasta	GALNT5	chr2	157252705	157323491
GALNT5_chr2_157252705_157323491	0/0	t0054	7522	1	0	0	1	0	copy fasta	GALNT5	chr2	157252705	157323491
GALNT5_chr2_157252705_157323491	0/0	t0055	7549	1	0	0	1	0	copy fasta	GALNT5	chr2	157252705	157323491
GALNT5_chr2_157252705_157323491	0/0	t0056	7548	1	0	0	1	0	copy fasta	GALNT5	chr2	157252705	157323491
GALNT5_chr2_157252705_157323491	0/0	t0057	7518	1	0	1	0	0	copy fasta	GALNT5	chr2	157252705	157323491
GALNT5_chr2_157252705_157323491	0/0	t0058	7522	1	0	0	1	0	copy fasta	GALNT5	chr2	157252705	157323491
GALNT5_chr2_157252705_157323491	0/0	t0059	7524	1	0	0	1	0	copy fasta	GALNT5	chr2	157252705	157323491
GALNT5_chr2_157252705_157323491	0/0	t0060	7522	1	0	1	0	0	copy fasta	GALNT5	chr2	157252705	157323491