JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GALNT5_chr2_157252705_157323491	0/0	t0061	7522	1	1	0	0	0	0	copy fasta	GALNT5	chr2	157252705	157323491
GALNT5_chr2_157252705_157323491	0/0	t0062	7522	1	1	0	0	0	0	copy fasta	GALNT5	chr2	157252705	157323491
GALNT5_chr2_157252705_157323491	0/0	t0063	7522	1	1	0	0	0	0	copy fasta	GALNT5	chr2	157252705	157323491
GALNT5_chr2_157252705_157323491	0/0	t0064	7518	1	1	0	0	0	0	copy fasta	GALNT5	chr2	157252705	157323491
GALNT5_chr2_157252705_157323491	0/0	t0065	7518	1	1	0	0	0	0	copy fasta	GALNT5	chr2	157252705	157323491
GALNT5_chr2_157252705_157323491	0/0	t0066	7519	1	1	0	0	0	0	copy fasta	GALNT5	chr2	157252705	157323491
GALNT5_chr2_157252705_157323491	0/0	t0067	7520	1	1	0	0	0	0	copy fasta	GALNT5	chr2	157252705	157323491
GALNT5_chr2_157252705_157323491	0/0	t0068	7523	1	0	0	1	0	0	copy fasta	GALNT5	chr2	157252705	157323491
GALNT5_chr2_157252705_157323491	0/0	t0069	7521	1	0	0	1	0	0	copy fasta	GALNT5	chr2	157252705	157323491
GALNT5_chr2_157252705_157323491	0/0	t0070	7521	1	0	0	1	0	0	copy fasta	GALNT5	chr2	157252705	157323491
GALNT5_chr2_157252705_157323491	0/0	t0071	7519	1	1	0	0	0	0	copy fasta	GALNT5	chr2	157252705	157323491
GALNT5_chr2_157252705_157323491	0/0	t0072	7520	1	1	0	0	0	0	copy fasta	GALNT5	chr2	157252705	157323491
GALNT5_chr2_157252705_157323491	0/0	t0073	7518	1	1	0	0	0	0	copy fasta	GALNT5	chr2	157252705	157323491
GALNT5_chr2_157252705_157323491	0/0	t0074	7522	1	0	0	1	0	0	copy fasta	GALNT5	chr2	157252705	157323491
GALNT5_chr2_157252705_157323491	0/0	t0075	7521	1	0	1	0	0	0	copy fasta	GALNT5	chr2	157252705	157323491
GALNT5_chr2_157252705_157323491	0/0	t0076	7522	1	1	0	0	0	0	copy fasta	GALNT5	chr2	157252705	157323491
GALNT5_chr2_157252705_157323491	0/0	t0077	7531	1	1	0	0	0	0	copy fasta	GALNT5	chr2	157252705	157323491
GALNT5_chr2_157252705_157323491	0/0	t0078	7527	1	1	0	0	0	0	copy fasta	GALNT5	chr2	157252705	157323491
GALNT5_chr2_157252705_157323491	0/0	t0079	7530	1	1	0	0	0	0	copy fasta	GALNT5	chr2	157252705	157323491
GALNT5_chr2_157252705_157323491	0/0	t0080	7531	1	0	1	0	0	0	copy fasta	GALNT5	chr2	157252705	157323491
GALNT5_chr2_157252705_157323491	0/0	t0081	7535	1	1	0	0	0	0	copy fasta	GALNT5	chr2	157252705	157323491
GALNT5_chr2_157252705_157323491	0/0	t0082	7533	1	1	0	0	0	0	copy fasta	GALNT5	chr2	157252705	157323491
GALNT5_chr2_157252705_157323491	0/0	t0083	7530	1	1	0	0	0	0	copy fasta	GALNT5	chr2	157252705	157323491
GALNT5_chr2_157252705_157323491	0/0	t0084	7531	1	0	1	0	0	0	copy fasta	GALNT5	chr2	157252705	157323491
GALNT5_chr2_157252705_157323491	0/0	t0085	7531	1	1	0	0	0	0	copy fasta	GALNT5	chr2	157252705	157323491
GALNT5_chr2_157252705_157323491	0/0	t0086	7531	1	1	0	0	0	0	copy fasta	GALNT5	chr2	157252705	157323491
GALNT5_chr2_157252705_157323491	0/0	t0087	7531	1	1	0	0	0	0	copy fasta	GALNT5	chr2	157252705	157323491
GALNT5_chr2_157252705_157323491	0/0	t0088	7526	1	1	0	0	0	0	copy fasta	GALNT5	chr2	157252705	157323491
GALNT5_chr2_157252705_157323491	0/0	t0089	7528	1	1	0	0	0	0	copy fasta	GALNT5	chr2	157252705	157323491
GALNT5_chr2_157252705_157323491	0/0	t0090	7530	1	1	0	0	0	0	copy fasta	GALNT5	chr2	157252705	157323491
GALNT5_chr2_157252705_157323491	0/0	t0091	7531	1	1	0	0	0	0	copy fasta	GALNT5	chr2	157252705	157323491
GALNT5_chr2_157252705_157323491	0/0	t0092	7532	1	1	0	0	0	0	copy fasta	GALNT5	chr2	157252705	157323491
GALNT5_chr2_157252705_157323491	0/0	t0093	7537	1	1	0	0	0	0	copy fasta	GALNT5	chr2	157252705	157323491
GALNT5_chr2_157252705_157323491	0/0	t0094	7534	1	1	0	0	0	0	copy fasta	GALNT5	chr2	157252705	157323491
GALNT5_chr2_157252705_157323491	0/0	t0095	7541	1	1	0	0	0	0	copy fasta	GALNT5	chr2	157252705	157323491
GALNT5_chr2_157252705_157323491	0/0	t0096	7537	1	1	0	0	0	0	copy fasta	GALNT5	chr2	157252705	157323491
GALNT5_chr2_157252705_157323491	0/0	t0097	7532	1	1	0	0	0	0	copy fasta	GALNT5	chr2	157252705	157323491
GALNT5_chr2_157252705_157323491	0/0	t0098	7535	1	1	0	0	0	0	copy fasta	GALNT5	chr2	157252705	157323491
GALNT5_chr2_157252705_157323491	0/0	t0099	7540	1	1	0	0	0	0	copy fasta	GALNT5	chr2	157252705	157323491
GALNT5_chr2_157252705_157323491	0/0	t0100	7522	1	1	0	0	0	0	copy fasta	GALNT5	chr2	157252705	157323491
GALNT5_chr2_157252705_157323491	0/0	t0101	7525	1	1	0	0	0	0	copy fasta	GALNT5	chr2	157252705	157323491
GALNT6_chr12_51346252_51396406	0/0	t0001	3435	39	17	9	8	1	4	copy fasta	GALNT6	chr12	51346252	51396406
GALNT6_chr12_51346252_51396406	0/0	t0002	3435	32	8	8	7	1	8	copy fasta	GALNT6	chr12	51346252	51396406
GALNT6_chr12_51346252_51396406	0/0	t0003	3439	29	2	9	17	0	1	copy fasta	GALNT6	chr12	51346252	51396406
GALNT6_chr12_51346252_51396406	0/0	t0004	3439	25	4	3	16	0	2	copy fasta	GALNT6	chr12	51346252	51396406
GALNT6_chr12_51346252_51396406	0/0	t0005	3435	25	0	6	14	3	2	copy fasta	GALNT6	chr12	51346252	51396406
GALNT6_chr12_51346252_51396406	0/0	t0006	3439	24	1	4	13	2	4	copy fasta	GALNT6	chr12	51346252	51396406
GALNT6_chr12_51346252_51396406	0/1	t0007	3439	22	1	0	14	0	6	copy fasta	GALNT6	chr12	51346252	51396406
GALNT6_chr12_51346252_51396406	0/0	t0008	3435	22	2	8	3	2	7	copy fasta	GALNT6	chr12	51346252	51396406
GALNT6_chr12_51346252_51396406	1/0	t0009	3439	21	5	1	14	0	0	copy fasta	GALNT6	chr12	51346252	51396406