JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GLYATL2_chr11_58829065_58849704	1/0	t0003	676	3	2	0	0	0	0	copy fasta	GLYATL2	chr11	58829065	58849704
GLYATL2_chr11_58829065_58849704	0/0	t0004	676	2	0	2	0	0	0	copy fasta	GLYATL2	chr11	58829065	58849704
GLYATL2_chr11_58829065_58849704	0/0	t0005	676	2	2	0	0	0	0	copy fasta	GLYATL2	chr11	58829065	58849704
GLYATL2_chr11_58829065_58849704	0/0	t0006	676	1	0	0	1	0	0	copy fasta	GLYATL2	chr11	58829065	58849704
GLYATL2_chr11_58829065_58849704	0/0	t0007	676	1	0	0	0	0	1	copy fasta	GLYATL2	chr11	58829065	58849704
GLYATL2_chr11_58829065_58849704	0/0	t0008	676	1	1	0	0	0	0	copy fasta	GLYATL2	chr11	58829065	58849704
GLYATL2_chr11_58829065_58849704	0/0	t0009	676	1	1	0	0	0	0	copy fasta	GLYATL2	chr11	58829065	58849704
GLYATL2_chr11_58829065_58849704	0/0	t0010	676	1	0	1	0	0	0	copy fasta	GLYATL2	chr11	58829065	58849704
GLYATL3_chr6_49494923_49533078	1/0	t0001	1313	170	63	22	62	8	14	copy fasta	GLYATL3	chr6	49494923	49533078
GLYATL3_chr6_49494923_49533078	0/0	t0002	1313	147	18	30	82	4	13	copy fasta	GLYATL3	chr6	49494923	49533078
GLYATL3_chr6_49494923_49533078	0/1	t0003	1313	44	1	7	23	4	8	copy fasta	GLYATL3	chr6	49494923	49533078
GLYATL3_chr6_49494923_49533078	0/0	t0004	1313	4	4	0	0	0	0	copy fasta	GLYATL3	chr6	49494923	49533078
GLYATL3_chr6_49494923_49533078	0/0	t0005	1313	3	2	1	0	0	0	copy fasta	GLYATL3	chr6	49494923	49533078
GLYATL3_chr6_49494923_49533078	0/0	t0006	1313	2	2	0	0	0	0	copy fasta	GLYATL3	chr6	49494923	49533078
GLYATL3_chr6_49494923_49533078	0/0	t0007	1313	2	1	1	0	0	0	copy fasta	GLYATL3	chr6	49494923	49533078
GLYATL3_chr6_49494923_49533078	0/0	t0008	1313	2	2	0	0	0	0	copy fasta	GLYATL3	chr6	49494923	49533078
GLYATL3_chr6_49494923_49533078	0/0	t0009	1313	1	0	0	0	0	1	copy fasta	GLYATL3	chr6	49494923	49533078
GLYATL3_chr6_49494923_49533078	0/0	t0010	1313	1	1	0	0	0	0	copy fasta	GLYATL3	chr6	49494923	49533078
GLYATL3_chr6_49494923_49533078	0/0	t0011	1313	1	1	0	0	0	0	copy fasta	GLYATL3	chr6	49494923	49533078
GLYATL3_chr6_49494923_49533078	0/0	t0012	1313	1	0	1	0	0	0	copy fasta	GLYATL3	chr6	49494923	49533078
GLYATL3_chr6_49494923_49533078	0/0	t0013	1313	1	0	0	1	0	0	copy fasta	GLYATL3	chr6	49494923	49533078
GLYATL3_chr6_49494923_49533078	0/0	t0014	1360	1	1	0	0	0	0	copy fasta	GLYATL3	chr6	49494923	49533078
GLYAT_chr11_58703757_58736943	0/1	t0001	1140	178	41	36	75	9	16	copy fasta	GLYAT	chr11	58703757	58736943
GLYAT_chr11_58703757_58736943	1/0	t0002	1134	138	26	24	74	1	12	copy fasta	GLYAT	chr11	58703757	58736943
GLYAT_chr11_58703757_58736943	0/0	t0003	1140	31	20	2	6	0	3	copy fasta	GLYAT	chr11	58703757	58736943
GLYAT_chr11_58703757_58736943	0/0	t0004	1134	8	0	0	8	0	0	copy fasta	GLYAT	chr11	58703757	58736943
GLYAT_chr11_58703757_58736943	0/0	t0005	1137	3	2	0	1	0	0	copy fasta	GLYAT	chr11	58703757	58736943
GLYAT_chr11_58703757_58736943	0/0	t0006	1140	2	2	0	0	0	0	copy fasta	GLYAT	chr11	58703757	58736943
GLYAT_chr11_58703757_58736943	0/0	t0007	1140	1	0	0	1	0	0	copy fasta	GLYAT	chr11	58703757	58736943
GLYAT_chr11_58703757_58736943	0/0	t0008	1134	1	1	0	0	0	0	copy fasta	GLYAT	chr11	58703757	58736943
GLYAT_chr11_58703757_58736943	0/0	t0009	1134	1	0	0	1	0	0	copy fasta	GLYAT	chr11	58703757	58736943
GLYAT_chr11_58703757_58736943	0/0	t0010	1134	1	0	0	0	0	1	copy fasta	GLYAT	chr11	58703757	58736943
GLYCTK_chr3_52282828_52300257	1/1	t0001	2220	286	46	62	129	12	35	copy fasta	GLYCTK	chr3	52282828	52300257
GLYCTK_chr3_52282828_52300257	0/0	t0002	2220	35	33	2	0	0	0	copy fasta	GLYCTK	chr3	52282828	52300257
GLYCTK_chr3_52282828_52300257	0/0	t0003	2220	15	3	7	0	3	2	copy fasta	GLYCTK	chr3	52282828	52300257
GLYCTK_chr3_52282828_52300257	0/0	t0004	2220	12	0	0	12	0	0	copy fasta	GLYCTK	chr3	52282828	52300257
GLYCTK_chr3_52282828_52300257	0/0	t0005	2220	4	3	1	0	0	0	copy fasta	GLYCTK	chr3	52282828	52300257
GLYCTK_chr3_52282828_52300257	0/0	t0006	2220	3	0	0	3	0	0	copy fasta	GLYCTK	chr3	52282828	52300257
GLYCTK_chr3_52282828_52300257	0/0	t0007	2220	2	0	0	0	0	2	copy fasta	GLYCTK	chr3	52282828	52300257
GLYCTK_chr3_52282828_52300257	0/0	t0008	2220	1	1	0	0	0	0	copy fasta	GLYCTK	chr3	52282828	52300257
GLYCTK_chr3_52282828_52300257	0/0	t0009	2220	1	0	0	1	0	0	copy fasta	GLYCTK	chr3	52282828	52300257
GLYCTK_chr3_52282828_52300257	0/0	t0010	2220	1	0	0	0	1	0	copy fasta	GLYCTK	chr3	52282828	52300257
GLYCTK_chr3_52282828_52300257	0/0	t0011	2220	1	0	0	1	0	0	copy fasta	GLYCTK	chr3	52282828	52300257
GLYCTK_chr3_52282828_52300257	0/0	t0012	2220	1	1	0	0	0	0	copy fasta	GLYCTK	chr3	52282828	52300257
GLYCTK_chr3_52282828_52300257	0/0	t0013	2220	1	1	0	0	0	0	copy fasta	GLYCTK	chr3	52282828	52300257
GLYCTK_chr3_52282828_52300257	0/0	t0014	2220	1	0	0	0	0	1	copy fasta	GLYCTK	chr3	52282828	52300257
GLYCTK_chr3_52282828_52300257	0/0	t0015	2220	1	0	0	1	0	0	copy fasta	GLYCTK	chr3	52282828	52300257
GLYCTK_chr3_52282828_52300257	0/0	t0016	2220	1	0	0	1	0	0	copy fasta	GLYCTK	chr3	52282828	52300257
GLYR1_chr16_4798203_4852288	1/0	t0001	2057	88	11	15	55	2	4	copy fasta	GLYR1	chr16	4798203	4852288
GLYR1_chr16_4798203_4852288	0/0	t0002	2059	63	18	10	23	5	7	copy fasta	GLYR1	chr16	4798203	4852288