JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GNA15_chr19_3131033_3168749	0/0	t0021	1149	1	0	0	1	0	0	copy fasta	GNA15	chr19	3131033	3168749
GNAI1_chr7_80129831_80231181	0/0	t0001	9027	40	6	9	22	2	1	copy fasta	GNAI1	chr7	80129831	80231181
GNAI1_chr7_80129831_80231181	0/0	t0002	9019	17	0	5	6	1	5	copy fasta	GNAI1	chr7	80129831	80231181
GNAI1_chr7_80129831_80231181	0/0	t0003	9027	16	0	5	9	0	2	copy fasta	GNAI1	chr7	80129831	80231181
GNAI1_chr7_80129831_80231181	0/0	t0004	9012	14	14	0	0	0	0	copy fasta	GNAI1	chr7	80129831	80231181
GNAI1_chr7_80129831_80231181	0/0	t0005	9025	7	1	2	1	1	2	copy fasta	GNAI1	chr7	80129831	80231181
GNAI1_chr7_80129831_80231181	0/0	t0006	9015	7	0	0	4	0	3	copy fasta	GNAI1	chr7	80129831	80231181
GNAI1_chr7_80129831_80231181	0/0	t0007	9025	6	0	0	4	1	1	copy fasta	GNAI1	chr7	80129831	80231181
GNAI1_chr7_80129831_80231181	0/0	t0008	9019	6	0	1	0	1	4	copy fasta	GNAI1	chr7	80129831	80231181
GNAI1_chr7_80129831_80231181	0/0	t0009	9028	6	0	1	5	0	0	copy fasta	GNAI1	chr7	80129831	80231181
GNAI1_chr7_80129831_80231181	0/0	t0010	9011	6	0	0	6	0	0	copy fasta	GNAI1	chr7	80129831	80231181
GNAI1_chr7_80129831_80231181	0/0	t0011	9027	5	5	0	0	0	0	copy fasta	GNAI1	chr7	80129831	80231181
GNAI1_chr7_80129831_80231181	0/0	t0012	9019	5	2	2	0	1	0	copy fasta	GNAI1	chr7	80129831	80231181
GNAI1_chr7_80129831_80231181	0/0	t0013	9017	4	4	0	0	0	0	copy fasta	GNAI1	chr7	80129831	80231181
GNAI1_chr7_80129831_80231181	0/0	t0014	9027	3	0	1	0	0	2	copy fasta	GNAI1	chr7	80129831	80231181
GNAI1_chr7_80129831_80231181	0/0	t0015	9029	3	0	1	0	0	2	copy fasta	GNAI1	chr7	80129831	80231181
GNAI1_chr7_80129831_80231181	0/0	t0016	9026	3	0	1	1	1	0	copy fasta	GNAI1	chr7	80129831	80231181
GNAI1_chr7_80129831_80231181	0/0	t0017	9028	3	0	2	1	0	0	copy fasta	GNAI1	chr7	80129831	80231181
GNAI1_chr7_80129831_80231181	0/0	t0018	9019	3	0	2	0	0	1	copy fasta	GNAI1	chr7	80129831	80231181
GNAI1_chr7_80129831_80231181	0/0	t0019	9019	3	0	0	3	0	0	copy fasta	GNAI1	chr7	80129831	80231181
GNAI1_chr7_80129831_80231181	0/0	t0020	9025	3	0	3	0	0	0	copy fasta	GNAI1	chr7	80129831	80231181
GNAI1_chr7_80129831_80231181	0/0	t0021	9026	3	0	0	3	0	0	copy fasta	GNAI1	chr7	80129831	80231181
GNAI1_chr7_80129831_80231181	0/0	t0022	9028	3	0	2	0	0	1	copy fasta	GNAI1	chr7	80129831	80231181
GNAI1_chr7_80129831_80231181	0/0	t0023	9029	3	1	0	2	0	0	copy fasta	GNAI1	chr7	80129831	80231181
GNAI1_chr7_80129831_80231181	0/0	t0024	9019	3	0	0	1	0	2	copy fasta	GNAI1	chr7	80129831	80231181
GNAI1_chr7_80129831_80231181	0/0	t0025	9014	3	3	0	0	0	0	copy fasta	GNAI1	chr7	80129831	80231181
GNAI1_chr7_80129831_80231181	0/0	t0026	9014	3	2	1	0	0	0	copy fasta	GNAI1	chr7	80129831	80231181
GNAI1_chr7_80129831_80231181	0/0	t0027	9028	2	0	0	1	0	1	copy fasta	GNAI1	chr7	80129831	80231181
GNAI1_chr7_80129831_80231181	0/0	t0028	9023	2	0	0	1	0	1	copy fasta	GNAI1	chr7	80129831	80231181
GNAI1_chr7_80129831_80231181	0/0	t0029	9025	2	0	2	0	0	0	copy fasta	GNAI1	chr7	80129831	80231181
GNAI1_chr7_80129831_80231181	0/0	t0030	9028	2	0	0	2	0	0	copy fasta	GNAI1	chr7	80129831	80231181
GNAI1_chr7_80129831_80231181	0/0	t0031	9029	2	0	1	0	0	1	copy fasta	GNAI1	chr7	80129831	80231181
GNAI1_chr7_80129831_80231181	0/0	t0032	9015	2	0	0	0	1	1	copy fasta	GNAI1	chr7	80129831	80231181
GNAI1_chr7_80129831_80231181	0/0	t0033	9030	2	2	0	0	0	0	copy fasta	GNAI1	chr7	80129831	80231181
GNAI1_chr7_80129831_80231181	0/0	t0034	9027	2	1	1	0	0	0	copy fasta	GNAI1	chr7	80129831	80231181
GNAI1_chr7_80129831_80231181	0/0	t0035	9028	2	2	0	0	0	0	copy fasta	GNAI1	chr7	80129831	80231181
GNAI1_chr7_80129831_80231181	0/0	t0036	9023	2	0	0	1	1	0	copy fasta	GNAI1	chr7	80129831	80231181
GNAI1_chr7_80129831_80231181	0/0	t0037	9025	2	2	0	0	0	0	copy fasta	GNAI1	chr7	80129831	80231181
GNAI1_chr7_80129831_80231181	0/0	t0038	9026	2	1	1	0	0	0	copy fasta	GNAI1	chr7	80129831	80231181
GNAI1_chr7_80129831_80231181	0/0	t0039	9031	2	0	0	2	0	0	copy fasta	GNAI1	chr7	80129831	80231181
GNAI1_chr7_80129831_80231181	0/0	t0040	9029	2	2	0	0	0	0	copy fasta	GNAI1	chr7	80129831	80231181
GNAI1_chr7_80129831_80231181	0/0	t0041	9027	2	2	0	0	0	0	copy fasta	GNAI1	chr7	80129831	80231181
GNAI1_chr7_80129831_80231181	0/0	t0042	9027	2	2	0	0	0	0	copy fasta	GNAI1	chr7	80129831	80231181
GNAI1_chr7_80129831_80231181	0/0	t0043	9029	2	2	0	0	0	0	copy fasta	GNAI1	chr7	80129831	80231181
GNAI1_chr7_80129831_80231181	0/0	t0044	9013	2	2	0	0	0	0	copy fasta	GNAI1	chr7	80129831	80231181
GNAI1_chr7_80129831_80231181	0/0	t0045	9021	2	2	0	0	0	0	copy fasta	GNAI1	chr7	80129831	80231181
GNAI1_chr7_80129831_80231181	0/0	t0046	9015	2	0	1	0	1	0	copy fasta	GNAI1	chr7	80129831	80231181
GNAI1_chr7_80129831_80231181	0/0	t0047	9027	2	2	0	0	0	0	copy fasta	GNAI1	chr7	80129831	80231181
GNAI1_chr7_80129831_80231181	0/0	t0048	9027	1	0	1	0	0	0	copy fasta	GNAI1	chr7	80129831	80231181
GNAI1_chr7_80129831_80231181	0/1	t0049	9025	1	0	0	0	0	0	copy fasta	GNAI1	chr7	80129831	80231181