JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GNAI1_chr7_80129831_80231181	0/0	t0050	9021	1	0	0	0	0	1	copy fasta	GNAI1	chr7	80129831	80231181
GNAI1_chr7_80129831_80231181	0/0	t0051	9023	1	0	1	0	0	0	copy fasta	GNAI1	chr7	80129831	80231181
GNAI1_chr7_80129831_80231181	0/0	t0052	9026	1	1	0	0	0	0	copy fasta	GNAI1	chr7	80129831	80231181
GNAI1_chr7_80129831_80231181	0/0	t0053	9027	1	0	0	1	0	0	copy fasta	GNAI1	chr7	80129831	80231181
GNAI1_chr7_80129831_80231181	0/0	t0054	9027	1	0	1	0	0	0	copy fasta	GNAI1	chr7	80129831	80231181
GNAI1_chr7_80129831_80231181	0/0	t0055	9027	1	0	0	0	1	0	copy fasta	GNAI1	chr7	80129831	80231181
GNAI1_chr7_80129831_80231181	0/0	t0056	9028	1	0	1	0	0	0	copy fasta	GNAI1	chr7	80129831	80231181
GNAI1_chr7_80129831_80231181	0/0	t0057	9029	1	0	0	1	0	0	copy fasta	GNAI1	chr7	80129831	80231181
GNAI1_chr7_80129831_80231181	0/0	t0058	9031	1	0	0	1	0	0	copy fasta	GNAI1	chr7	80129831	80231181
GNAI1_chr7_80129831_80231181	0/0	t0059	9016	1	0	1	0	0	0	copy fasta	GNAI1	chr7	80129831	80231181
GNAI1_chr7_80129831_80231181	0/0	t0060	9019	1	0	0	1	0	0	copy fasta	GNAI1	chr7	80129831	80231181
GNAI1_chr7_80129831_80231181	0/0	t0061	9012	1	0	0	1	0	0	copy fasta	GNAI1	chr7	80129831	80231181
GNAI1_chr7_80129831_80231181	0/0	t0062	9015	1	0	0	0	0	1	copy fasta	GNAI1	chr7	80129831	80231181
GNAI1_chr7_80129831_80231181	0/0	t0063	9020	1	0	1	0	0	0	copy fasta	GNAI1	chr7	80129831	80231181
GNAI1_chr7_80129831_80231181	0/0	t0064	9021	1	0	0	0	0	1	copy fasta	GNAI1	chr7	80129831	80231181
GNAI1_chr7_80129831_80231181	0/0	t0065	9025	1	0	1	0	0	0	copy fasta	GNAI1	chr7	80129831	80231181
GNAI1_chr7_80129831_80231181	0/0	t0066	9018	1	0	0	1	0	0	copy fasta	GNAI1	chr7	80129831	80231181
GNAI1_chr7_80129831_80231181	0/0	t0067	9021	1	0	1	0	0	0	copy fasta	GNAI1	chr7	80129831	80231181
GNAI1_chr7_80129831_80231181	0/0	t0068	9027	1	0	0	0	0	1	copy fasta	GNAI1	chr7	80129831	80231181
GNAI1_chr7_80129831_80231181	0/0	t0069	9019	1	0	1	0	0	0	copy fasta	GNAI1	chr7	80129831	80231181
GNAI1_chr7_80129831_80231181	0/0	t0070	9025	1	0	1	0	0	0	copy fasta	GNAI1	chr7	80129831	80231181
GNAI1_chr7_80129831_80231181	0/0	t0071	9011	1	0	0	1	0	0	copy fasta	GNAI1	chr7	80129831	80231181
GNAI1_chr7_80129831_80231181	0/0	t0072	9013	1	0	0	1	0	0	copy fasta	GNAI1	chr7	80129831	80231181
GNAI1_chr7_80129831_80231181	0/0	t0073	9015	1	0	0	0	0	1	copy fasta	GNAI1	chr7	80129831	80231181
GNAI1_chr7_80129831_80231181	0/0	t0074	9017	1	0	0	0	0	1	copy fasta	GNAI1	chr7	80129831	80231181
GNAI1_chr7_80129831_80231181	0/0	t0075	8993	1	1	0	0	0	0	copy fasta	GNAI1	chr7	80129831	80231181
GNAI1_chr7_80129831_80231181	0/0	t0076	9020	1	0	1	0	0	0	copy fasta	GNAI1	chr7	80129831	80231181
GNAI1_chr7_80129831_80231181	0/0	t0077	9030	1	0	1	0	0	0	copy fasta	GNAI1	chr7	80129831	80231181
GNAI1_chr7_80129831_80231181	0/0	t0078	9027	1	0	1	0	0	0	copy fasta	GNAI1	chr7	80129831	80231181
GNAI1_chr7_80129831_80231181	0/0	t0079	9029	1	0	1	0	0	0	copy fasta	GNAI1	chr7	80129831	80231181
GNAI1_chr7_80129831_80231181	0/0	t0080	9019	1	0	0	1	0	0	copy fasta	GNAI1	chr7	80129831	80231181
GNAI1_chr7_80129831_80231181	0/0	t0081	9019	1	0	0	0	0	1	copy fasta	GNAI1	chr7	80129831	80231181
GNAI1_chr7_80129831_80231181	0/0	t0082	9021	1	0	1	0	0	0	copy fasta	GNAI1	chr7	80129831	80231181
GNAI1_chr7_80129831_80231181	0/0	t0083	9023	1	0	0	0	1	0	copy fasta	GNAI1	chr7	80129831	80231181
GNAI1_chr7_80129831_80231181	0/0	t0084	9024	1	0	0	0	1	0	copy fasta	GNAI1	chr7	80129831	80231181
GNAI1_chr7_80129831_80231181	0/0	t0085	9025	1	0	1	0	0	0	copy fasta	GNAI1	chr7	80129831	80231181
GNAI1_chr7_80129831_80231181	0/0	t0086	9026	1	1	0	0	0	0	copy fasta	GNAI1	chr7	80129831	80231181
GNAI1_chr7_80129831_80231181	0/0	t0087	9025	1	0	1	0	0	0	copy fasta	GNAI1	chr7	80129831	80231181
GNAI1_chr7_80129831_80231181	0/0	t0088	9027	1	0	0	1	0	0	copy fasta	GNAI1	chr7	80129831	80231181
GNAI1_chr7_80129831_80231181	0/0	t0089	9027	1	0	0	1	0	0	copy fasta	GNAI1	chr7	80129831	80231181
GNAI1_chr7_80129831_80231181	0/0	t0090	9027	1	0	0	0	0	1	copy fasta	GNAI1	chr7	80129831	80231181
GNAI1_chr7_80129831_80231181	0/0	t0091	9028	1	0	1	0	0	0	copy fasta	GNAI1	chr7	80129831	80231181
GNAI1_chr7_80129831_80231181	0/0	t0092	9028	1	0	0	1	0	0	copy fasta	GNAI1	chr7	80129831	80231181
GNAI1_chr7_80129831_80231181	0/0	t0093	9028	1	1	0	0	0	0	copy fasta	GNAI1	chr7	80129831	80231181
GNAI1_chr7_80129831_80231181	0/0	t0094	9029	1	0	0	1	0	0	copy fasta	GNAI1	chr7	80129831	80231181
GNAI1_chr7_80129831_80231181	0/0	t0095	9030	1	0	0	1	0	0	copy fasta	GNAI1	chr7	80129831	80231181
GNAI1_chr7_80129831_80231181	0/0	t0096	9030	1	0	0	1	0	0	copy fasta	GNAI1	chr7	80129831	80231181
GNAI1_chr7_80129831_80231181	0/0	t0097	9030	1	1	0	0	0	0	copy fasta	GNAI1	chr7	80129831	80231181
GNAI1_chr7_80129831_80231181	0/0	t0098	9031	1	1	0	0	0	0	copy fasta	GNAI1	chr7	80129831	80231181
GNAI1_chr7_80129831_80231181	0/0	t0099	9031	1	0	1	0	0	0	copy fasta	GNAI1	chr7	80129831	80231181