JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GNAI1_chr7_80129831_80231181	0/0	t0100	9031	1	1	0	0	0	0	copy fasta	GNAI1	chr7	80129831	80231181
GNAI1_chr7_80129831_80231181	0/0	t0101	9033	1	0	1	0	0	0	copy fasta	GNAI1	chr7	80129831	80231181
GNAI1_chr7_80129831_80231181	0/0	t0102	9033	1	0	0	0	0	1	copy fasta	GNAI1	chr7	80129831	80231181
GNAI1_chr7_80129831_80231181	0/0	t0103	9033	1	1	0	0	0	0	copy fasta	GNAI1	chr7	80129831	80231181
GNAI1_chr7_80129831_80231181	0/0	t0104	9034	1	0	0	1	0	0	copy fasta	GNAI1	chr7	80129831	80231181
GNAI1_chr7_80129831_80231181	0/0	t0105	9019	1	0	0	1	0	0	copy fasta	GNAI1	chr7	80129831	80231181
GNAI1_chr7_80129831_80231181	1/0	t0106	9019	1	0	0	0	0	0	copy fasta	GNAI1	chr7	80129831	80231181
GNAI1_chr7_80129831_80231181	0/0	t0107	9021	1	1	0	0	0	0	copy fasta	GNAI1	chr7	80129831	80231181
GNAI1_chr7_80129831_80231181	0/0	t0108	9023	1	1	0	0	0	0	copy fasta	GNAI1	chr7	80129831	80231181
GNAI1_chr7_80129831_80231181	0/0	t0109	9023	1	1	0	0	0	0	copy fasta	GNAI1	chr7	80129831	80231181
GNAI1_chr7_80129831_80231181	0/0	t0110	9026	1	1	0	0	0	0	copy fasta	GNAI1	chr7	80129831	80231181
GNAI1_chr7_80129831_80231181	0/0	t0111	9026	1	1	0	0	0	0	copy fasta	GNAI1	chr7	80129831	80231181
GNAI1_chr7_80129831_80231181	0/0	t0112	9030	1	1	0	0	0	0	copy fasta	GNAI1	chr7	80129831	80231181
GNAI1_chr7_80129831_80231181	0/0	t0113	9029	1	1	0	0	0	0	copy fasta	GNAI1	chr7	80129831	80231181
GNAI1_chr7_80129831_80231181	0/0	t0114	9032	1	0	0	0	0	1	copy fasta	GNAI1	chr7	80129831	80231181
GNAI1_chr7_80129831_80231181	0/0	t0115	9011	1	1	0	0	0	0	copy fasta	GNAI1	chr7	80129831	80231181
GNAI1_chr7_80129831_80231181	0/0	t0116	9016	1	0	1	0	0	0	copy fasta	GNAI1	chr7	80129831	80231181
GNAI1_chr7_80129831_80231181	0/0	t0117	9013	1	1	0	0	0	0	copy fasta	GNAI1	chr7	80129831	80231181
GNAI1_chr7_80129831_80231181	0/0	t0118	9015	1	1	0	0	0	0	copy fasta	GNAI1	chr7	80129831	80231181
GNAI1_chr7_80129831_80231181	0/0	t0119	9012	1	1	0	0	0	0	copy fasta	GNAI1	chr7	80129831	80231181
GNAI1_chr7_80129831_80231181	0/0	t0120	9015	1	1	0	0	0	0	copy fasta	GNAI1	chr7	80129831	80231181
GNAI1_chr7_80129831_80231181	0/0	t0121	9015	1	0	0	1	0	0	copy fasta	GNAI1	chr7	80129831	80231181
GNAI1_chr7_80129831_80231181	0/0	t0122	9013	1	0	0	1	0	0	copy fasta	GNAI1	chr7	80129831	80231181
GNAI1_chr7_80129831_80231181	0/0	t0123	9020	1	1	0	0	0	0	copy fasta	GNAI1	chr7	80129831	80231181
GNAI1_chr7_80129831_80231181	0/0	t0124	9018	1	1	0	0	0	0	copy fasta	GNAI1	chr7	80129831	80231181
GNAI1_chr7_80129831_80231181	0/0	t0125	9013	1	0	1	0	0	0	copy fasta	GNAI1	chr7	80129831	80231181
GNAI1_chr7_80129831_80231181	0/0	t0126	9019	1	1	0	0	0	0	copy fasta	GNAI1	chr7	80129831	80231181
GNAI1_chr7_80129831_80231181	0/0	t0127	9016	1	1	0	0	0	0	copy fasta	GNAI1	chr7	80129831	80231181
GNAI1_chr7_80129831_80231181	0/0	t0128	9020	1	1	0	0	0	0	copy fasta	GNAI1	chr7	80129831	80231181
GNAI1_chr7_80129831_80231181	0/0	t0129	9022	1	1	0	0	0	0	copy fasta	GNAI1	chr7	80129831	80231181
GNAI1_chr7_80129831_80231181	0/0	t0130	9019	1	1	0	0	0	0	copy fasta	GNAI1	chr7	80129831	80231181
GNAI1_chr7_80129831_80231181	0/0	t0131	9020	1	1	0	0	0	0	copy fasta	GNAI1	chr7	80129831	80231181
GNAI1_chr7_80129831_80231181	0/0	t0132	9029	1	1	0	0	0	0	copy fasta	GNAI1	chr7	80129831	80231181
GNAI1_chr7_80129831_80231181	0/0	t0133	9022	1	1	0	0	0	0	copy fasta	GNAI1	chr7	80129831	80231181
GNAI1_chr7_80129831_80231181	0/0	t0134	9018	1	1	0	0	0	0	copy fasta	GNAI1	chr7	80129831	80231181
GNAI1_chr7_80129831_80231181	0/0	t0135	9023	1	1	0	0	0	0	copy fasta	GNAI1	chr7	80129831	80231181
GNAI1_chr7_80129831_80231181	0/0	t0136	9030	1	1	0	0	0	0	copy fasta	GNAI1	chr7	80129831	80231181
GNAI1_chr7_80129831_80231181	0/0	t0137	9021	1	1	0	0	0	0	copy fasta	GNAI1	chr7	80129831	80231181
GNAI1_chr7_80129831_80231181	0/0	t0138	9028	1	1	0	0	0	0	copy fasta	GNAI1	chr7	80129831	80231181
GNAI1_chr7_80129831_80231181	0/0	t0139	9028	1	1	0	0	0	0	copy fasta	GNAI1	chr7	80129831	80231181
GNAI2_chr3_50231204_50264362	1/1	t0001	1152	248	81	44	76	18	27	copy fasta	GNAI2	chr3	50231204	50264362
GNAI2_chr3_50231204_50264362	0/0	t0002	1151	65	0	12	52	0	1	copy fasta	GNAI2	chr3	50231204	50264362
GNAI2_chr3_50231204_50264362	0/0	t0003	1152	3	3	0	0	0	0	copy fasta	GNAI2	chr3	50231204	50264362
GNAI2_chr3_50231204_50264362	0/0	t0004	1151	2	0	2	0	0	0	copy fasta	GNAI2	chr3	50231204	50264362
GNAI2_chr3_50231204_50264362	0/0	t0005	1152	2	0	0	0	0	2	copy fasta	GNAI2	chr3	50231204	50264362
GNAI2_chr3_50231204_50264362	0/0	t0006	1152	2	1	1	0	0	0	copy fasta	GNAI2	chr3	50231204	50264362
GNAI2_chr3_50231204_50264362	0/0	t0007	1152	1	1	0	0	0	0	copy fasta	GNAI2	chr3	50231204	50264362
GNAI2_chr3_50231204_50264362	0/0	t0008	1152	1	1	0	0	0	0	copy fasta	GNAI2	chr3	50231204	50264362
GNAI2_chr3_50231204_50264362	0/0	t0009	1151	1	0	0	1	0	0	copy fasta	GNAI2	chr3	50231204	50264362
GNAI2_chr3_50231204_50264362	0/0	t0010	1152	1	0	1	0	0	0	copy fasta	GNAI2	chr3	50231204	50264362